Browse Element(s) Details


OsAffx.29871.3.S1_at

Description tigr:9637.m01362
TID=OsAffx.29871.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1629011/11ABC transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16260OsAffx.6296.1.S1_at11/119+9921133..9923650hypothetical protein
LOC_Os09g16270OsAffx.6297.1.S1_at11/119+9927174..9927782hypothetical protein
LOC_Os09g16280Os.52894.1.S1_at11/119+9932450..9933161expressed protein
LOC_Os09g16290OsAffx.29871.3.S1_at11/119+9944092..9952453ABC transporter family protein
LOC_Os09g16290Os.55739.1.S1_x_at1/119+9944092..9952453ABC transporter family protein
LOC_Os09g16300NANA9+9957668..9958374hypothetical protein
LOC_Os09g16310OsAffx.17738.1.S1_at11/119+9960354..9962582hypothetical protein
LOC_Os09g16320NANA9+9967753..9968102hypothetical protein
LOC_Os09g16330OsAffx.29871.1.S1_x_at11/119+9969573..9978350PDR5-like ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29871.3.S1_at--1117--2271Chr09:9945365..9945389 (25 bp)
AAAGGAGTTAAGCACACCCCATGAC
LOC_Os09g16290
OsAffx.29871.3.S1_at--1103--1791Chr09:9945350..9945374 (25 bp)
ACCCCATGACGGTTCAAGCGACTTA
LOC_Os09g16290
OsAffx.29871.3.S1_at--1138--4451Chr09:9945276..9945300 (25 bp)
GCCTCTGGAAGCAACGTTTGTCATA
LOC_Os09g16290
OsAffx.29871.3.S1_at--870--8011Chr09:9945249..9945273 (25 bp)
GGAGGAATCCTCCATATATTGCTGT
LOC_Os09g16290
OsAffx.29871.3.S1_at--169--4731Chr09:9945229..9945253 (25 bp)
GCTGTGAATTTCTTCTTCACCGTTG
LOC_Os09g16290
OsAffx.29871.3.S1_at--460--10511Chr09:9945214..9945238 (25 bp)
TTCACCGTTGTAATTGCACTATTGT
LOC_Os09g16290
OsAffx.29871.3.S1_at--1158--2771Chr09:9944917..9944941 (25 bp)
AAGAGCATCTCACATGTACTCGCCT
LOC_Os09g16290
OsAffx.29871.3.S1_at--331--371Chr09:9944271..9944295 (25 bp)
ATCAATGGGTTGGTTACTTCACAGT
LOC_Os09g16290
OsAffx.29871.3.S1_at--379--351Chr09:9944222..9944246 (25 bp)
ATAACGGTGTGCGTGTATCTGACTT
LOC_Os09g16290
OsAffx.29871.3.S1_at--1155--2051Chr09:9944168..9944192 (25 bp)
ACTTGTTATGGGTGGCTGCTATGGC
LOC_Os09g16290
OsAffx.29871.3.S1_at--908--4851Chr09:9944151..9944175 (25 bp)
GCTATGGCCGTTGTGTCATTTGCAA
LOC_Os09g16290
Target Sequence 
AAAGGAGTTAAGCACACCCCATGACGGTTCAAGCGACTTATTGTTTCCAACTAAATATTCACAGACCTTTGTTATACAAT
GTTTGGCTTGCCTCTGGAAGCAACGTTTGTCATATTGGAGGAATCCTCCATATATTGCTGTGAATTTCTTCTTCACCGTT
GTAATTGCACTATTGTTTGGAACAATGTTCTGGGGCGTTGGTAGAAAAAGGGAAAGAGCATCTCACATGTACTCGCCTTT
GCCATATGCCTTGGGGCAGAGAATTCCAATATGGTGGAGATGGTACTATTGGATTTGCCCTGTTGCATGGACAATCAATG
GGTTGGTTACTTCACAGTTTGGGGATGTAGATGACAAGTTTGATAACGGTGTGCGTGTATCTGACTTTGTTGAGAGCTAC
TTTGGTTACAATCTTGACTTGTTATGGGTGGCTGCTATGGCCGTTGTGTCATTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29871.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis