Browse Element(s) Details


OsAffx.29878.1.S1_at

Description tigr:9637.m01424
TID=OsAffx.29878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1687011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16840NANA9+10279917..10281191retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16850OsAffx.17749.1.S1_at11/119+10286472..10288597BTB/POZ domain containing protein
LOC_Os09g16860NANA9+10294411..10301773retrotransposon protein, putative, unclassified
LOC_Os09g16870OsAffx.29878.1.S1_at11/119+10305222..10306406BTB/POZ domain containing protein
LOC_Os09g16880Os.46306.1.S1_x_at2/119+10309955..10313081transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16890NANA9+10315321..10317927transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16899Os.37711.3.S1_x_at1/119+10321000..10321390NA
LOC_Os09g16899OsAffx.28616.1.S1_at1/119+10321000..10321390NA
LOC_Os09g16899OsAffx.31115.1.S1_at1/119+10321000..10321390NA
LOC_Os09g16910Os.9367.1.S1_a_at11/119+10327825..10332198Cysteine desulfurase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29878.1.S1_at--993--9591Chr09:10305826..10305850 (25 bp)
TCATAATGGCGCGTCAGTCGGAGGT
LOC_Os09g16870
OsAffx.29878.1.S1_at--195--10451Chr09:10305853..10305877 (25 bp)
TTAGGGCAGAGCTACTTGGCTCCAT
LOC_Os09g16870
OsAffx.29878.1.S1_at--948--5811Chr09:10305963..10305987 (25 bp)
GACCTGCCCACCTGTGTAAAAGACA
LOC_Os09g16870
OsAffx.29878.1.S1_at--829--2751Chr09:10305982..10306006 (25 bp)
AAGACACAGACGATCAGTCCTCCTG
LOC_Os09g16870
OsAffx.29878.1.S1_at--352--8571Chr09:10306005..10306029 (25 bp)
TGGATCTTCGAATTGCAGCACCTGC
LOC_Os09g16870
OsAffx.29878.1.S1_at--638--2091Chr09:10306116..10306140 (25 bp)
ACATCAACACTGGAGCTGGCGGAGA
LOC_Os09g16870
OsAffx.29878.1.S1_at--538--9911Chr09:10306149..10306173 (25 bp)
TATCCGAAGCTAAGAACGTCCTGTC
LOC_Os09g16870
OsAffx.29878.1.S1_at--978--7251Chr09:10306166..10306190 (25 bp)
GTCCTGTCTTGTATTCCTATCGAAT
LOC_Os09g16870
OsAffx.29878.1.S1_at--225--3131Chr09:10306197..10306221 (25 bp)
AATTTCGCCGAGGTGGCAACGACTA
LOC_Os09g16870
OsAffx.29878.1.S1_at--247--1371Chr09:10306243..10306267 (25 bp)
AGAGCTACCCGAGTGTGCTGTCCGA
LOC_Os09g16870
OsAffx.29878.1.S1_at--765--3451Chr09:10306277..10306301 (25 bp)
CAGGTTTAAGAGACCACGGCCGTCT
LOC_Os09g16870
Target Sequence 
TCATAATGGCGCGTCAGTCGGAGGTGTTTAGGGCAGAGCTACTTGGCTCCATGGCCGAGAGCAAGATGGAGTGCATCACC
ATCTCCGACATGAGCGCCTCCACCTTCAAGCACATGCTCCACTACATCTACTGCAACGACCTGCCCACCTGTGTAAAAGA
CACAGACGATCAGTCCTCCTGGATCTTCGAATTGCAGCACCTGCTCGTCACCGCCGATCGATACGGAGTGGATACGTTGA
AGGATTTGTGCGAGGACACGCTCTGCGCTGACATCACCACGGACACGGTGACATCAACACTGGAGCTGGCGGAGACGAGA
TCATATCCGAAGCTAAGAACGTCCTGTCTTGTATTCCTATCGAATACACAAAATTTCGCCGAGGTGGCAACGACTAAGGA
GTACTATAATCTGATACAGAGCTACCCGAGTGTGCTGTCCGAGATAAGGAACAGGTTTAAGAGACCACGGCCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis