Browse Element(s) Details


OsAffx.29885.1.S1_at

Description tigr:9637.m01454
TID=OsAffx.29885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1712011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17080NANA9+10462222..10463181F-box domain containing protein
LOC_Os09g17089NANA9+10467745..10469297NA
LOC_Os09g17100OsAffx.17752.1.S1_at11/119+10472904..10473604hypothetical protein
LOC_Os09g17110OsAffx.29884.1.S1_at11/119+10476590..10481004Protein kinase domain containing protein
LOC_Os09g17120OsAffx.29885.1.S1_at11/119+10486855..10488821hypothetical protein
LOC_Os09g17120Os.27811.1.S1_at1/119+10486855..10488821hypothetical protein
LOC_Os09g17130OsAffx.17753.1.S1_at11/119+10492871..10494993hypothetical protein
LOC_Os09g17140NANA9+10506254..10507537retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29885.1.S1_at--730--2151Chr09:10487988..10488012 (25 bp)
ACACAAACTCTAGGCATCGGATCAG
LOC_Os09g17120
OsAffx.29885.1.S1_at--972--6771Chr09:10487955..10487979 (25 bp)
GTTACTGTCACATTTGGCGCAATTT
LOC_Os09g17120
OsAffx.29885.1.S1_at--82--8011Chr09:10487919..10487943 (25 bp)
GGAGGATATAAAGCCGACGACCATT
LOC_Os09g17120
OsAffx.29885.1.S1_at--718--2831Chr09:10487704..10487728 (25 bp)
AAGTTTGGGTGCTGCTTTTATGCTA
LOC_Os09g17120
OsAffx.29885.1.S1_at--741--6911Chr09:10487678..10487702 (25 bp)
GTATGTATTTGGTACTGGCTCCAGT
LOC_Os09g17120
OsAffx.29885.1.S1_at--1042--3651Chr09:10487599..10487623 (25 bp)
CTTATTCACGGAGCCATTGCATGCA
LOC_Os09g17120
OsAffx.29885.1.S1_at--741--651Chr09:10487579..10487603 (25 bp)
ATGCACCCCGTGTTGCAATAGCGAT
LOC_Os09g17120
OsAffx.29885.1.S1_at--1002--10771Chr09:10487063..10487087 (25 bp)
TTGTAGACCGTATCCTGAGGGCACT
LOC_Os09g17120
OsAffx.29885.1.S1_at--313--10652Chr09:10486935..10486959 (25 bp)
TTCCCTCAGGCGGTGACAACGACAG
LOC_Os09g17120
OsAffx.29885.1.S1_at--47--2171Chr09:10486914..10486938 (25 bp)
ACAGCCACGGTGACGACGCGTAGAT
LOC_Os09g17120
OsAffx.29885.1.S1_at--299--6951Chr09:10486895..10486919 (25 bp)
GTAGATCCATCGCTGGCCGTGATGA
LOC_Os09g17120
Target Sequence 
ACACAAACTCTAGGCATCGGATCAGTACTAATTGTTACTGTCACATTTGGCGCAATTTTAGCCATACCTGGAGGATATAA
AGCCGACGACCATTACAATGGCGGTACACCAACACTTGCTGGAAGTTCGGTGATAAGTTTGGGTGCTGCTTTTATGCTAG
GTATGTATTTGGTACTGGCTCCAGTGGCTCGATGGACTGCAATTGCAATCTGTGTAATGATGATGATTGCATCTCTATGC
TTATTCACGGAGCCATTGCATGCACCCCGTGTTGCAATAGCGATGTATGTTAGGAAGGGAAATCAGGATATCCAAAGAAC
ATATATTATTAACTGTGGGACACCAAATAACATGCATGGTAACTATCGACAGGTGATACTTGTAGACCGTATCCTGAGGG
CACTAGGGCCCCTCACCAACTCATCCGGCCTTCCTCTTTTCCCTCAGGCGGTGACAACGACAGCCACGGTGACGACGCGT
AGATCCATCGCTGGCCGTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis