Browse Element(s) Details


OsAffx.29900.1.S1_at

Description tigr:9637.m01522
TID=OsAffx.29900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1779010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17760Os.24591.1.S1_at11/119+10855526..10861748expressed protein
LOC_Os09g17770Os.52916.1.A1_at11/119+10871550..10876952expressed protein
LOC_Os09g17780NANA9+10879282..10880268retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17790OsAffx.29900.1.S1_at10/119+10882558..10883604hypothetical protein
LOC_Os09g17800NANA9+10884616..10889039retrotransposon protein, putative, unclassified
LOC_Os09g17810Os.52715.1.S1_at11/119+10897051..10899226expressed protein
LOC_Os09g17820OsAffx.29901.1.S1_at11/119+10899665..10900382hypothetical protein
LOC_Os09g17830Os.8657.1.S1_at11/119+10904712..10908704Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29900.1.S1_at--770--7691Chr09:10882608..10882632 (25 bp)
GGGTGACGTAGTTGCCTACGGCTAC
LOC_Os09g17790
OsAffx.29900.1.S1_at--509--3391Chr09:10882642..10882666 (25 bp)
CAGCGTCAGCGGCACGGACGACAAC
LOC_Os09g17790
OsAffx.29900.1.S1_at--129--5611NONE
GACAACGACGCCTCGTTGGTGTGGC
NONE
OsAffx.29900.1.S1_at--291--491Chr09:10883215..10883239 (25 bp)
ATCTGGGCGACGAGCACGCGCAAGT
LOC_Os09g17790
OsAffx.29900.1.S1_at--690--10871Chr09:10883252..10883276 (25 bp)
TTGGCCACTTCCGTCTTCTGCGGTG
LOC_Os09g17790
OsAffx.29900.1.S1_at--810--7531Chr09:10883274..10883298 (25 bp)
GTGGCTCGGCTACGGCAACATATCG
LOC_Os09g17790
OsAffx.29900.1.S1_at--772--1931Chr09:10883285..10883309 (25 bp)
ACGGCAACATATCGGCAGCGTGTAC
LOC_Os09g17790
OsAffx.29900.1.S1_at--67--10531Chr09:10883347..10883371 (25 bp)
TTCACCCTCGTCGAGTTTGTGCGGA
LOC_Os09g17790
OsAffx.29900.1.S1_at--69--832Chr09:10883473..10883497 (25 bp)
ATGGCACAGTTTCAATTTTGCAAAA
LOC_Os09g17790
OsAffx.29900.1.S1_at--96--5151Chr09:10883492..10883516 (25 bp)
GCAAAATTTCAATAGCACCTAAGGA
LOC_Os09g17790
OsAffx.29900.1.S1_at--193--1511Chr09:10883505..10883529 (25 bp)
AGCACCTAAGGATATCATGAATAGT
LOC_Os09g17790
Target Sequence 
GGGTGACGTAGTTGCCTACGGCTACCGACGCACCCAGCGTCAGCGGCACGGACGACAACGACGCCTCGTTGGTGTGGCGG
CAAGGGGTGGCGCCGAGGACGGGCTGTGGGAGGCGATCTGGGCGACGAGCACGCGCAAGTACCCGCTCAGCCTTGGCCAC
TTCCGTCTTCTGCGGTGGCTCGGCTACGGCAACATATCGGCAGCGTGTACCCTCCTCGAGCTCCGTGGCGGCGGCGGCGG
CGCCCTCTTCACCCTCGTCGAGTTTGTGCGGAGGCACGGCCGACCGACGGGGAGGAGAAGAAACAAAGAGAAGGAAGAAG
GAGAGGAGAAGAAGAGAAGGAACAAGACGGAAGGGATGGAAAACGTGACGGCGATGGCACAGTTTCAATTTTGCAAAATT
TCAATAGCACCTAAGGATATCATGAATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis