Browse Element(s) Details


Os.24591.1.S1_at

Description gb:AK070620.1
DB_XREF= gi:32980644
TID=Os.24591.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.24591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062D09, full insert sequence.
FL= gb:AK070620.1 gb:AK102844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1776011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17710NANA9+10829078..10830601transposon protein, putative, unclassified
LOC_Os09g17720OsAffx.29899.1.S1_at11/119+10831825..10833087hypothetical protein
LOC_Os09g17730Os.10309.1.S1_at11/119+10833974..10843000proton pump interactor, putative, expressed
LOC_Os09g17740NANA9+10844778..10846155Chlorophyll a-b binding protein 1, chloroplast precursor, putative, expressed
LOC_Os09g17750Os.49340.1.S1_at10/119+10848768..10852195oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g17760Os.24591.1.S1_at11/119+10855526..10861748expressed protein
LOC_Os09g17770Os.52916.1.A1_at11/119+10871550..10876952expressed protein
LOC_Os09g17780NANA9+10879282..10880268retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17790OsAffx.29900.1.S1_at10/119+10882558..10883604hypothetical protein
LOC_Os09g17800NANA9+10884616..10889039retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24591.1.S1_at--818--5951Chr09:10856050..10856074 (25 bp)
GAGACGGCTACCAAGTTCCTAAAGA
LOC_Os09g17760
Os.24591.1.S1_at--42--5271Chr09:10855934..10855958 (25 bp)
GAATGATTTTGTCACATCCTCCTTT
LOC_Os09g17760
Os.24591.1.S1_at--813--3811Chr09:10855916..10855940 (25 bp)
CTCCTTTGAGGAACACTACCATTGT
LOC_Os09g17760
Os.24591.1.S1_at--16--1211Chr09:10855838..10855862 (25 bp)
AGTTCAATTCAGCAACTTGGCCCTT
LOC_Os09g17760
Os.24591.1.S1_at--1054--611Chr09:10855806..10855830 (25 bp)
ATGCTGTTCAGTGGCGCCAAGAAAT
LOC_Os09g17760
Os.24591.1.S1_at--20--271Chr09:10855783..10855807 (25 bp)
ATATGCTGGTACTCTTTTCTTTTTC
LOC_Os09g17760
Os.24591.1.S1_at--588--10071Chr09:10855693..10855717 (25 bp)
TATGTTTTACCCTAATCCAGTTCTT
LOC_Os09g17760
Os.24591.1.S1_at--865--3031Chr09:10855680..10855704 (25 bp)
AATCCAGTTCTTTTGCTGACCTTTG
LOC_Os09g17760
Os.24591.1.S1_at--133--5851Chr09:10855663..10855687 (25 bp)
GACCTTTGCCGCTGCATGTGTGTAT
LOC_Os09g17760
Os.24591.1.S1_at--671--791Chr09:10855648..10855672 (25 bp)
ATGTGTGTATTTTTCCAGTAGCTGT
LOC_Os09g17760
Os.24591.1.S1_at--280--5691Chr09:10855575..10855599 (25 bp)
GACTTGCTGCGTTGGACTTGAGTAT
LOC_Os09g17760
Target Sequence 
GAGACGGCTACCAAGTTCCTAAAGAAAACCTATAATNTTCCCAAGAAGATNTGATGAACTCGATGTACATTTTNTGGAAA
CAAAATCATGAAACCCNCTGAGGAAGTCAGGATTTGGAATGATTTTGTCACATCCTCCTTTGAGGAACACTACCATTGTA
AAGCTACCNCTGCGGAGTTTGCCTTATNTGAGGNGATTGATTTGAACGGGGGAGTTCAATTCAGCAACTTGGCCCTTNTA
TCANATGCTGTTCAGTGGCGCCAAGAAATATGCTGGTACTCTTTTCTTTTTCTTTTTTCCTTTTTTTTTTGGGGGGGGGG
GATTACTTACAGGTCGATTTGTTTATTATTATGATTATATGTTTTACCCTAATCCAGTTCTTTTGCTGACCTTTGCCGCT
GCATGTGTGTATTTTTCCAGTAGCTGTAGTTTGCAACAGATATACCCATCTTGTGAATAAGTTTTGTACTGGTGTGACTT
GCTGCGTTGGACTTGAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis