Browse Element(s) Details


Os.49340.1.S1_at

Description gb:AK108901.1
DB_XREF= gi:32994110
TID=Os.49340.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F06, full insert sequence.
FL= gb:AK108901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1775010/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17700NANA9+10825013..10825249hypothetical protein
LOC_Os09g17710NANA9+10829078..10830601transposon protein, putative, unclassified
LOC_Os09g17720OsAffx.29899.1.S1_at11/119+10831825..10833087hypothetical protein
LOC_Os09g17730Os.10309.1.S1_at11/119+10833974..10843000proton pump interactor, putative, expressed
LOC_Os09g17740NANA9+10844778..10846155Chlorophyll a-b binding protein 1, chloroplast precursor, putative, expressed
LOC_Os09g17750Os.49340.1.S1_at10/119+10848768..10852195oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g17760Os.24591.1.S1_at11/119+10855526..10861748expressed protein
LOC_Os09g17770Os.52916.1.A1_at11/119+10871550..10876952expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49340.1.S1_at--721--7871Chr09:10850327..10850351 (25 bp)
GGTTAATCTAACGTCTTTCACACAC
LOC_Os09g17750
Os.49340.1.S1_at--1000--1111Chr09:10849854..10849878 (25 bp)
AGTAAGGTTTGGTCATTGGCCAGCG
LOC_Os09g17750
Os.49340.1.S1_at--739--4871Chr09:10849822..10849846 (25 bp)
GCTATCTCTTAGCTTCTACTTATGA
LOC_Os09g17750
Os.49340.1.S1_at--460--2051Chr09:10849672..10849696 (25 bp)
ACTTATCTTCTGGTGTCTCCGTCAT
LOC_Os09g17750
Os.49340.1.S1_at--1150--9611Chr09:10849242..10849262 (21 bp)
TCATGGCTGCGGATCCAGGTGTAGT
LOC_Os09g17750
Os.49340.1.S1_at--1107--351Chr09:10849207..10849231 (25 bp)
ATAATGCGGGAGCTTCCTCCATGTC
LOC_Os09g17750
Os.49340.1.S1_at--1156--6051Chr09:10849122..10849146 (25 bp)
GAGTTGATGCTGTCCTTGATGCCGC
LOC_Os09g17750
Os.49340.1.S1_at--1125--5071Chr09:10848987..10849117 (25 bp)
GCACCACCTGACTCATCTGGAAAGT
LOC_Os09g17750
Os.49340.1.S1_at--367--5851Chr09:10848940..10848964 (25 bp)
GACCATAACGTCTTCTCAGTTGTCA
LOC_Os09g17750
Os.49340.1.S1_at--935--1011Chr09:10848787..10848811 (25 bp)
AGGTTTACTCTGTTCGATGGGCAAT
LOC_Os09g17750
Os.49340.1.S1_at--804--8151Chr09:10848768..10848792 (25 bp)
GGCAATAGTTTCAGGCCTTTTCAGT
NONE
Target Sequence 
GGTTAATCTAACGTCTTTCACACACAGATGTGTGTCANAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTG
GTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATAC
GANCTTCATCGACAACTTCACTTATCTTCTGGTGTCTCCGTCATGGCTGCGGATCCAGGTGTAGTACAGACAGGCATAAT
GCGGGAGCTTCCTCCATGTCTTTCTTGGCTTGCGCTTTCTGTTCTGCGCCTCCTGAATCTCCTACAACAACCTGATACGG
GAGTTGATGCTGTCCTTGATGCCGCTTTGGCACCACCTGACTCATCTGGAAAGTATTTCTTTGGAGGGAAAGGAAGGACC
ATAACGTCTTCTCAGTTGTCATACAACGTTGAAGTGGCCAAGAAGCTATGGGCAGAATCTTTAGCATTGTTCAATGAGCT
ACAGAATAGAGTATGTGAACTGAGGACTAGCTGAACTAACTTGTGAAAATTATGAGGTTACTGAATTTCAGGTTTACTCT
GTTCGATGGGCAATAGTTTCAGGCCTTTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis