Browse Element(s) Details


Os.10309.1.S1_at

Description gb:AK100527.1
DB_XREF= gi:32985736
TID=Os.10309.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101D09, full insert sequence.
FL= gb:AK059253.1 gb:AB117987.1 gb:AK100527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1773011/11proton pump interactor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17680Os.53645.1.S1_at11/119+10809134..10811497ATP-NAD kinase family protein, putative, expressed
LOC_Os09g17690NANA9+10820770..10821132hypothetical protein
LOC_Os09g17700NANA9+10825013..10825249hypothetical protein
LOC_Os09g17710NANA9+10829078..10830601transposon protein, putative, unclassified
LOC_Os09g17720OsAffx.29899.1.S1_at11/119+10831825..10833087hypothetical protein
LOC_Os09g17730Os.10309.1.S1_at11/119+10833974..10843000proton pump interactor, putative, expressed
LOC_Os09g17740NANA9+10844778..10846155Chlorophyll a-b binding protein 1, chloroplast precursor, putative, expressed
LOC_Os09g17750Os.49340.1.S1_at10/119+10848768..10852195oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g17760Os.24591.1.S1_at11/119+10855526..10861748expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010155biological_processregulation of proton transport
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10309.1.S1_at--314--4911Chr09:10842405..10842429 (25 bp)
GCTTCTGCTCCGGTGATGAGAGAAC
LOC_Os09g17730
Os.10309.1.S1_at--930--7431Chr09:10842439..10842463 (25 bp)
GTGTCCGGTACAGCAGAAACGTCGT
LOC_Os09g17730
Os.10309.1.S1_at--1130--2571Chr09:10842456..10842480 (25 bp)
AACGTCGTGACCAAGAGCAAGGCCC
LOC_Os09g17730
Os.10309.1.S1_at--829--2731Chr09:10842507..10842531 (25 bp)
AAGAAAGCCCAGTCGTACTGGTCCT
LOC_Os09g17730
Os.10309.1.S1_at--113--4471Chr09:10842579..10842603 (25 bp)
GCCGTGCTAGGCTACTACCAGTACT
LOC_Os09g17730
Os.10309.1.S1_at--681--2491Chr09:10842692..10842716 (25 bp)
AACAGAGTGCGTGGTCTGCTGAGAC
LOC_Os09g17730
Os.10309.1.S1_at--999--1391Chr09:10842727..10842751 (25 bp)
AGACTGGAGATTTGTTCGTTTTCGT
LOC_Os09g17730
Os.10309.1.S1_at--397--5251Chr09:10842825..10842849 (25 bp)
GAATCTCCTATATACTGCGAGTGAT
LOC_Os09g17730
Os.10309.1.S1_at--1129--7391Chr09:10842845..10842869 (25 bp)
GTGATCTCATGTACTCTTAAACTGA
LOC_Os09g17730
Os.10309.1.S1_at--551--4931Chr09:10842871..10842895 (25 bp)
GCATAGGTTGCCGTTCTGAAATAAA
LOC_Os09g17730
Os.10309.1.S1_at--585--2451Chr09:10842894..10842918 (25 bp)
AACAATGCCGCATGCTTTAGGTTTA
LOC_Os09g17730
Target Sequence 
GCTTCTGCTCCGGTGATGAGAGAACAGAGGGAGAGTGTCCGGTACAGCAGAAACGTCGTGACCAAGAGCAAGGCCCCGCT
GCCGAAGGCGATCCTGAGGAGGAAGAAAGCCCAGTCGTACTGGTCCTGGGCTGGCCCTGCTGCTGCAGTGGCCGCCGCGC
TCGTCGCCCTGCTTGCCGTGCTAGGCTACTACCAGTACTACCTCCCAGCGAGCGCTAGCAACTGATGGAAGGAAAGCAGG
CAGCCCCCCCTTGAGAATTGCTTACTTGAACAATTTTGCAGGTGAGAAACAGAGTGCGTGGTCTGCTGAGACGTGGACTG
AAAGACTGGAGATTTGTTCGTTTTCGTTCTGTTAGTTTGATGATCGGTGGATAAGAGTAAGGAAAAAAAAAGGATAGAAG
TTAATTTTGGTTGGGACTTAGAATCTCCTATATACTGCGAGTGATCTCATGTACTCTTAAACTGAAGCATAGGTTGCCGT
TCTGAAATAAACAATGCCGCATGCTTTAGGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis