Browse Element(s) Details


Os.53645.1.S1_at

Description gb:AK073719.1
DB_XREF= gi:32983742
TID=Os.53645.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061O07, full insert sequence.
FL= gb:AK073719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1768011/11ATP-NAD kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17640NANA9+10795067..10795641hypothetical protein
LOC_Os09g17650OsAffx.29898.1.S1_at11/119+10797022..10797372expressed protein
LOC_Os09g17660OsAffx.27508.94.S1_s_at11/119+10800053..10801378expressed protein
LOC_Os09g17670OsAffx.17760.1.S1_at11/119+10803555..10803809hypothetical protein
LOC_Os09g17680Os.53645.1.S1_at11/119+10809134..10811497ATP-NAD kinase family protein, putative, expressed
LOC_Os09g17690NANA9+10820770..10821132hypothetical protein
LOC_Os09g17700NANA9+10825013..10825249hypothetical protein
LOC_Os09g17710NANA9+10829078..10830601transposon protein, putative, unclassified
LOC_Os09g17720OsAffx.29899.1.S1_at11/119+10831825..10833087hypothetical protein
LOC_Os09g17730Os.10309.1.S1_at11/119+10833974..10843000proton pump interactor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006741biological_processNADP biosynthesis
GO:0019363biological_processpyridine nucleotide biosynthesis
GO:0005829cellular_componentcytosol
GO:0003951molecular_functionNAD+ kinase activity
GO:0042736molecular_functionNADH kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53645.1.S1_at--677--3271Chr09:10809629..10809653 (25 bp)
CAACACTGGAGAGAGCTCGCATTTA
LOC_Os09g17680
Os.53645.1.S1_at--623--3091Chr09:10809605..10809629 (25 bp)
AATTAATTGCAGGTCAAGTGGTCTC
LOC_Os09g17680
Os.53645.1.S1_at--231--4371Chr09:10809454..10809478 (25 bp)
CCACTGCTGCATGGGTTAGTTAAGC
LOC_Os09g17680
Os.53645.1.S1_at--114--7891Chr09:10809441..10809465 (25 bp)
GGTTAGTTAAGCAAGGTCAACACAT
LOC_Os09g17680
Os.53645.1.S1_at--507--7831Chr09:10809427..10809451 (25 bp)
GGTCAACACATACTTGTCGTTTGGT
LOC_Os09g17680
Os.53645.1.S1_at--832--6471Chr09:10809340..10809364 (25 bp)
GATACACTGGAGATCTCCTCTGATG
LOC_Os09g17680
Os.53645.1.S1_at--691--9251Chr09:10809325..10809349 (25 bp)
TCCTCTGATGCTCCAATCTTGAAAG
LOC_Os09g17680
Os.53645.1.S1_at--539--3471Chr09:10809274..10809298 (25 bp)
CAGGGATCTTAGTAATGCAATAACA
LOC_Os09g17680
Os.53645.1.S1_at--571--3591Chr09:10809251..10809275 (25 bp)
CATTATCATCGTTATTGTGCTTGTT
LOC_Os09g17680
Os.53645.1.S1_at--23--6291Chr09:10809216..10809240 (25 bp)
GATGTTTGACACTTGAGTTTCTGAG
LOC_Os09g17680
Os.53645.1.S1_at--797--5971Chr09:10809194..10809218 (25 bp)
GAGAACTGTCTGATATAGATGCGTA
LOC_Os09g17680
Target Sequence 
CAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTG
CTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCA
AGGGATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTTTGGTACAATGAGGAAGG
CGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAGCATGGAGATACACTGGAGATCTCCTCTGATGCTCCAA
TCTTGAAAGTTATTTTGCCAGAAAATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTT
GTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis