Browse Element(s) Details


OsAffx.17760.1.S1_at

Description tigr:9637.m01508
TID=OsAffx.17760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1767011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17640NANA9+10795067..10795641hypothetical protein
LOC_Os09g17650OsAffx.29898.1.S1_at11/119+10797022..10797372expressed protein
LOC_Os09g17660OsAffx.27508.94.S1_s_at11/119+10800053..10801378expressed protein
LOC_Os09g17670OsAffx.17760.1.S1_at11/119+10803555..10803809hypothetical protein
LOC_Os09g17680Os.53645.1.S1_at11/119+10809134..10811497ATP-NAD kinase family protein, putative, expressed
LOC_Os09g17690NANA9+10820770..10821132hypothetical protein
LOC_Os09g17700NANA9+10825013..10825249hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17760.1.S1_at--742--4931Chr09:10803586..10803610 (25 bp)
GCTTGGCAGCGGCAGCGATTCCCTT
LOC_Os09g17670
OsAffx.17760.1.S1_at--586--1631Chr09:10803599..10803623 (25 bp)
AGCGATTCCCTTCTCAACTGCGCTT
LOC_Os09g17670
OsAffx.17760.1.S1_at--874--4111Chr09:10803655..10803679 (25 bp)
CGCTTGACAGCGGTGGCGATTCCGT
LOC_Os09g17670
OsAffx.17760.1.S1_at--234--5651Chr09:10803660..10803684 (25 bp)
GACAGCGGTGGCGATTCCGTGCTTA
LOC_Os09g17670
OsAffx.17760.1.S1_at--555--8471Chr09:10803668..10803692 (25 bp)
TGGCGATTCCGTGCTTAGAGGCGCA
LOC_Os09g17670
OsAffx.17760.1.S1_at--346--91Chr09:10803673..10803697 (25 bp)
ATTCCGTGCTTAGAGGCGCACGCCG
LOC_Os09g17670
OsAffx.17760.1.S1_at--525--9451Chr09:10803711..10803735 (25 bp)
TCGGCAGCGCGCAGCGGCATCATGC
LOC_Os09g17670
OsAffx.17760.1.S1_at--753--8271Chr09:10803726..10803750 (25 bp)
GGCATCATGCCCTTGTTGCGCAGCG
LOC_Os09g17670
OsAffx.17760.1.S1_at--830--411Chr09:10803729..10803753 (25 bp)
ATCATGCCCTTGTTGCGCAGCGGCA
LOC_Os09g17670
OsAffx.17760.1.S1_at--46--6691Chr09:10803740..10803764 (25 bp)
GTTGCGCAGCGGCAGTGCAGAGGTC
LOC_Os09g17670
OsAffx.17760.1.S1_at--429--3951Chr09:10803749..10803773 (25 bp)
CGGCAGTGCAGAGGTCGAGGACGAC
LOC_Os09g17670
Target Sequence 
GCTTGGCAGCGGCAGCGATTCCCTTCTCAACTGCGCTTGACGGCGGCGGCGCGATTCCCTTCTCGGCGGCGCTTGACAGC
GGTGGCGATTCCGTGCTTAGAGGCGCACGCCGGTGGCGTCCGTGCTCGGCAGCGCGCAGCGGCATCATGCCCTTGTTGCG
CAGCGGCAGTGCAGAGGTCGAGGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis