Browse Element(s) Details


OsAffx.29898.1.S1_at

Description tigr:9637.m01506
TID=OsAffx.29898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1765011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17640NANA9+10795067..10795641hypothetical protein
LOC_Os09g17650OsAffx.29898.1.S1_at11/119+10797022..10797372expressed protein
LOC_Os09g17660OsAffx.27508.94.S1_s_at11/119+10800053..10801378expressed protein
LOC_Os09g17670OsAffx.17760.1.S1_at11/119+10803555..10803809hypothetical protein
LOC_Os09g17680Os.53645.1.S1_at11/119+10809134..10811497ATP-NAD kinase family protein, putative, expressed
LOC_Os09g17690NANA9+10820770..10821132hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29898.1.S1_at--886--8051Chr09:10797052..10797076 (25 bp)
GGAGACAGCGTCACGCTGCAATTCC
LOC_Os09g17650
OsAffx.29898.1.S1_at--662--9011Chr09:10797068..10797092 (25 bp)
TGCAATTCCCGGTCACGGAGATTGT
LOC_Os09g17650
OsAffx.29898.1.S1_at--849--8471Chr09:10797093..10797117 (25 bp)
TGGCGGCGACGAATCTAAGGTGAAC
LOC_Os09g17650
OsAffx.29898.1.S1_at--504--9771Chr09:10797108..10797132 (25 bp)
TAAGGTGAACAACGCCATCGAGGTT
LOC_Os09g17650
OsAffx.29898.1.S1_at--54--4171Chr09:10797120..10797144 (25 bp)
CGCCATCGAGGTTGCGATCGATCAT
LOC_Os09g17650
OsAffx.29898.1.S1_at--896--1731Chr09:10797157..10797181 (25 bp)
ACCATCTCGCTGAGGGATCGTGAGC
LOC_Os09g17650
OsAffx.29898.1.S1_at--185--5391Chr09:10797189..10797213 (25 bp)
GAAGCAACAGCCGAGCCTTCTCGAT
LOC_Os09g17650
OsAffx.29898.1.S1_at--483--6271Chr09:10797211..10797235 (25 bp)
GATGTGCGCCTCTTGATGACACCGG
LOC_Os09g17650
OsAffx.29898.1.S1_at--183--671Chr09:10797226..10797250 (25 bp)
ATGACACCGGGCTATGATGAGAAGA
LOC_Os09g17650
OsAffx.29898.1.S1_at--254--8471Chr09:10797259..10797283 (25 bp)
TGGCGGTCCAAGAAGGTCGATGACA
LOC_Os09g17650
OsAffx.29898.1.S1_at--705--1451Chr09:10797311..10797335 (25 bp)
AGAAGGCTCCTACGGAAGATGGAAC
LOC_Os09g17650
Target Sequence 
GGAGACAGCGTCACGCTGCAATTCCCGGTCACGGAGATTGTTGGCGGCGACGAATCTAAGGTGAACAACGCCATCGAGGT
TGCGATCGATCATGGCGACGTGCTCACCATCTCGCTGAGGGATCGTGAGCAGCAGAAGAAGCAACAGCCGAGCCTTCTCG
ATGTGCGCCTCTTGATGACACCGGGCTATGATGAGAAGAAGGTGGAGTGGCGGTCCAAGAAGGTCGATGACAAAGTGTGG
TTAGAGGTGACCATCAAGAAGAAGGCTCCTACGGAAGATGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis