Browse Element(s) Details


OsAffx.29910.1.S1_at

Description tigr:9637.m01564
TID=OsAffx.29910.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1830011/11hypothetical protein
LOC_Os09g1819011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18250OsAffx.29911.1.S1_at11/119+11200494..11203190hypothetical protein
LOC_Os09g18260OsAffx.17769.1.S1_at11/119+11206999..11212451Protein kinase domain containing protein
LOC_Os09g18270NANA9+11215489..11216154transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18280NANA9+11217863..11218896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18290NANA9+11219542..11220242hypothetical protein
LOC_Os09g18300OsAffx.29910.1.S1_at11/119+11225371..11225772hypothetical protein
LOC_Os09g18310OsAffx.17770.1.S1_x_at10/119+11231463..11232157retrotransposon, putative, centromere-specific
LOC_Os09g18320Os.18949.1.S1_at10/119+11235232..11239921Bystin family protein, expressed
LOC_Os09g18330OsAffx.29913.1.S1_at11/119+11246739..11247256hypothetical protein
LOC_Os09g18340NANA9+11249798..11252334transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29910.1.S1_at--1124--912Chr09:11225699..11225723 (25 bp)
AGGCATCGTCGATAATGCGTGCGGC
LOC_Os09g18300
OsAffx.29910.1.S1_at--310--9112Chr09:11225680..11225704 (25 bp)
TGCGGCCATGGCAAGCGATGCCATG
LOC_Os09g18300
OsAffx.29910.1.S1_at--466--2672Chr09:11225668..11225692 (25 bp)
AAGCGATGCCATGAGAATACCACAT
LOC_Os09g18300
OsAffx.29910.1.S1_at--29--8392Chr09:11225589..11225613 (25 bp)
GGCGAGCTCGTGCAACCACTGATAT
LOC_Os09g18300
OsAffx.29910.1.S1_at--841--8832Chr09:11225570..11225594 (25 bp)
TGATATCCCACACCAACGAGAACAT
LOC_Os09g18300
OsAffx.29910.1.S1_at--330--1712Chr09:11225559..11225583 (25 bp)
ACCAACGAGAACATGCGCTCACATC
LOC_Os09g18300
OsAffx.29910.1.S1_at--909--4572Chr09:11225545..11225569 (25 bp)
GCGCTCACATCGCTGCCAATGTAAG
LOC_Os09g18300
OsAffx.29910.1.S1_at--888--512Chr09:11225537..11225561 (25 bp)
ATCGCTGCCAATGTAAGGGCCTGCA
LOC_Os09g18300
OsAffx.29910.1.S1_at--286--6132Chr09:11225449..11225473 (25 bp)
GAGGGCCTGTGCGACCACTGAGCTC
LOC_Os09g18300
OsAffx.29910.1.S1_at--1033--8912Chr09:11225431..11225455 (25 bp)
TGAGCTCCTGCTTGCCGAGTTGCCG
LOC_Os09g18300
OsAffx.29910.1.S1_at--398--9072Chr09:11225423..11225447 (25 bp)
TGCTTGCCGAGTTGCCGTCCACGCT
LOC_Os09g18300
Target Sequence 
AGGCATCGTCGATAATGCGTGCGGCCATGGCAAGCGATGCCATGAGAATACCACATGGACGCGCGGGCGTGGGATGCGAC
GAGTNGAGGCCGACAGGTGACGGGTGGGCGGGCGAGCTCGTGCAACCACTGATATCCCACACCAACGAGAACATGCGCTC
ACATCGCTGCCAATGTAAGGGCCTGCACNCGCTTCCGACGTCCCCGTCGAGNGAGGGTGACAGGGACGCTTCCTCNGAGC
TCAACTTGGCGAGGGCCTGTGCGACCACTGAGCTCCTGCTTGCCGAGTTGCCGTCCACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis