Browse Element(s) Details


OsAffx.2994.1.S1_at

Description tigr:9630.m04680
TID=OsAffx.2994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4804010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48000Os.10869.1.S1_at11/112+29367151..29375217TBC domain containing protein, expressed
LOC_Os02g48010Os.11658.1.S2_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.11658.1.S1_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.56102.1.S1_x_at10/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48020OsAffx.24774.1.S1_at11/112+29390261..29390748hypothetical protein
LOC_Os02g48030NANA2+29394455..29395504hypothetical protein
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein
LOC_Os02g48050OsAffx.2995.1.S1_at11/112+29409281..29410874hypothetical protein
LOC_Os02g48050OsAffx.5258.1.S1_x_at2/112+29409281..29410874hypothetical protein
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g48070OsAffx.24775.1.S1_at11/112+29421140..29421424hypothetical protein
LOC_Os02g48080Os.16139.1.S1_at10/112+29423895..29426578Serine/threonine-protein kinase receptor precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2994.1.S1_at--152--3211Chr02:29401077..29401101 (25 bp)
CAAGGTACAAGCTTTTACTGTGCAA
LOC_Os02g48040
OsAffx.2994.1.S1_at--451--9891Chr02:29401062..29401086 (25 bp)
TACTGTGCAAGTCTTTTTTCCCCAG
LOC_Os02g48040
OsAffx.2994.1.S1_at--456--10391NONE
TTTTCCCCAGGGTCTGATGCTCTTG
NONE
OsAffx.2994.1.S1_at--529--631Chr02:29399573..29399597 (25 bp)
ATGCTCTTGCTGTGGCTGTATTTGT
LOC_Os02g48040
OsAffx.2994.1.S1_at--701--8331Chr02:29399560..29399584 (25 bp)
GGCTGTATTTGTTCGATTGCATGAG
LOC_Os02g48040
OsAffx.2994.1.S1_at--1025--4971Chr02:29399542..29399566 (25 bp)
GCATGAGAACATACGTGACCGACTA
LOC_Os02g48040
OsAffx.2994.1.S1_at--810--8911Chr02:29399527..29399551 (25 bp)
TGACCGACTACGTTGGCGACGGAGA
LOC_Os02g48040
OsAffx.2994.1.S1_at--1001--5731Chr02:29399510..29399534 (25 bp)
GACGGAGACTCGTGGTTTACTAAGT
LOC_Os02g48040
OsAffx.2994.1.S1_at--281--10791Chr02:29399480..29399504 (25 bp)
TTGTTTGTTGTAGCCGTGCCCATGG
LOC_Os02g48040
OsAffx.2994.1.S1_at--67--9171Chr02:29399464..29399488 (25 bp)
TGCCCATGGCTGACCTTTTTAGCAT
LOC_Os02g48040
OsAffx.2994.1.S1_at--180--10371Chr02:29399449..29399473 (25 bp)
TTTTTAGCATCTTCGCGTGGCTATG
LOC_Os02g48040
Target Sequence 
CAAGGTACAAGCTTTTACTGTGCAAGTCTTTTTTCCCCAGGGTCTGATGCTCTTGCTGTGGCTGTATTTGTTCGATTGCA
TGAGAACATACGTGACCGACTACGTTGGCGACGGAGACTCGTGGTTTACTAAGTTTGTTTTGTTTGTTGTAGCCGTGCCC
ATGGCTGACCTTTTTAGCATCTTCGCGTGGCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis