Browse Element(s) Details


OsAffx.29947.1.S1_at

Description tigr:9637.m01781
TID=OsAffx.29947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g208002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20750OsAffx.6348.1.S1_at11/119+12501624..12502148hypothetical protein
LOC_Os09g20760NANA9+12506674..12508442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20770OsAffx.18314.1.S1_at1/119+12511574..12516407hypothetical protein
LOC_Os09g20780OsAffx.29946.1.S1_at5/119+12519956..12520243RNA recognition motif family protein
LOC_Os09g20790OsAffx.6349.1.S1_at11/119+12520761..12520997hypothetical protein
LOC_Os09g20800OsAffx.29947.1.S1_at2/119+12527112..12528106hypothetical protein
LOC_Os09g20810NANA9+12535620..12538846Strictosidine synthase family protein
LOC_Os09g20820OsAffx.6350.1.S1_at10/119+12539721..12543788Enolase, putative, expressed
LOC_Os09g20830Os.9890.1.S1_at9/119+12544956..12549095pentatricopeptide, putative, expressed
LOC_Os09g20840OsAffx.6351.1.S1_at11/119+12550172..12550639hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29947.1.S1_at--10--2111Chr09:12528453..12528477 (25 bp)
ACATCCACCATGGTAATCGTCGTCA
NONE
OsAffx.29947.1.S1_at--459--511Chr09:12528438..12528462 (25 bp)
ATCGTCGTCACAGTCGCATGTGTAT
NONE
OsAffx.29947.1.S1_at--572--3511Chr09:12528422..12528446 (25 bp)
CATGTGTATACTGCGGCCGTCGTCA
NONE
OsAffx.29947.1.S1_at--1133--9671Chr09:12528330..12528354 (25 bp)
TCACCGTTGTATGCGTCCGCTGCAA
NONE
OsAffx.29947.1.S1_at--1131--10811Chr09:12528216..12528240 (25 bp)
TTGTCGTCATTGTCGCATGTGTACG
NONE
OsAffx.29947.1.S1_at--236--3511Chr09:12528201..12528225 (25 bp)
CATGTGTACGTGTGGTCGTTGCATC
NONE
OsAffx.29947.1.S1_at--57--8711Chr09:12528171..12528195 (25 bp)
TGTCGTCTGCGTCCGCCATGATGGA
NONE
OsAffx.29947.1.S1_at--147--9791Chr09:12528129..12528153 (25 bp)
TAAGTCCGACTGTGTGTTTGCCACA
NONE
OsAffx.29947.1.S1_at--526--1291Chr09:12528103..12528127 (25 bp)
AGATCCATCGCGGTTGTCACCATGG
NONE
OsAffx.29947.1.S1_at--217--9871Chr09:12528077..12528100 (24 bp)
TACATCCGTCATGGCCACAGCAAGT
LOC_Os09g20800
OsAffx.29947.1.S1_at--1065--391Chr09:12527165..12527189 (25 bp)
ATCAGAGATCTATTCACCGAGAAGT
LOC_Os09g20800
Target Sequence 
ACATCCACCATGGTAATCGTCGTCACAGTCGCATGTGTATACTGCGGCCGTCGTCATCGCCTACGTCTGCTGCGGCCGCC
GCCCTCATATGTGGCCGTCTCGTCCGCCACTGCCATCGCCGACTCACCGTTGTATGCGTCCGCTGCAACCACCGTCTTGG
TCTACGTCCGCCGTGGCCGTTGTCGTCGCATGCGTCCACTGCAGCCGCCGCGCTGGTCTGCATCAGCCACGCGGCCGTTG
TCGTCATTGTCGCATGTGTACGTGTGGTCGTTGCATCGCCGCTGTCGTCTGCGTCCGCCATGATGGACCGCCGTCGTCAT
CACCTAAGTCCGACTGTGTGTTTGCCACACAGATCCATCGCGGTTGTCACCATGGCCTACATCCGTCATGGCCACAGCAA
GTTTGTGACAAGGAAGGATAGTATCAAAATCATTTATGCATTTGTTAGGAACCTTATTATGGATACAAGGAATTTGCTCC
ACATTGCTATATACAACATCAACTACATCAGAGATCTATTCACCGAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis