Browse Element(s) Details


OsAffx.18314.1.S1_at

Description tigr:9638.m01718
TID=OsAffx.18314.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2072011/11hypothetical protein
LOC_Os09g207701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20690OsAffx.30465.1.S1_at11/1110+10137535..10138304hypothetical protein
LOC_Os10g20690Os.54774.1.S1_x_at1/1110+10137535..10138304hypothetical protein
LOC_Os10g20700OsAffx.6711.1.S1_at11/1110+10142433..10143307hypothetical protein
LOC_Os10g20710OsAffx.18313.1.S1_at11/1110+10150657..10154558formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g20720OsAffx.18314.1.S1_at11/1110+10162017..10162413hypothetical protein
LOC_Os10g20730OsAffx.18315.1.S1_at11/1110+10171932..10172324hypothetical protein
LOC_Os10g20740NANA10+10180442..10181477hypothetical protein
LOC_Os10g20750Os.46012.2.S1_x_at9/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.46012.3.S1_x_at5/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.27088.1.A1_x_at4/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.54691.1.S1_x_at1/1110+10183031..10188623retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18314.1.S1_at--1162--3931Chr10:10162339..10162363 (25 bp)
CGGCTCAGCAGGGAGACAAATCGAT
LOC_Os10g20720
OsAffx.18314.1.S1_at--693--2194Chr09:12511847..12511869 (22 bp)
ACAAATCGATGGGTGGGTCCCACGT
LOC_Os09g20770
OsAffx.18314.1.S1_at--220--7711Chr10:10162310..10162334 (25 bp)
GGGTCCCACGTGCAGCACTTGAGCA
LOC_Os10g20720
OsAffx.18314.1.S1_at--956--1491Chr10:10162179..10162321 (25 bp)
AGCACTTGAGCAGCTGCCTCTTGCA
LOC_Os10g20720
OsAffx.18314.1.S1_at--358--2071Chr10:10162176..10162318 (25 bp)
ACTTGAGCAGCTGCCTCTTGCAGGG
LOC_Os10g20720
OsAffx.18314.1.S1_at--591--7351Chr10:10162151..10162175 (25 bp)
GTGACATGGAGGGTTTCCAGAAAAA
LOC_Os10g20720
OsAffx.18314.1.S1_at--1066--7671Chr10:10162141..10162165 (25 bp)
GGGTTTCCAGAAAAATAATCAGTCT
LOC_Os10g20720
OsAffx.18314.1.S1_at--510--5351Chr10:10162103..10162127 (25 bp)
GAAGATATATTACTTTCCAAAGGAA
LOC_Os10g20720
OsAffx.18314.1.S1_at--992--8713Chr10:10162090..10162114 (25 bp)
TTTCCAAAGGAACCGTTGGTGCAGC
LOC_Os10g20720
OsAffx.18314.1.S1_at--820--2911Chr10:10162084..10162108 (25 bp)
AAGGAACCGTTGGTGCAGCAAAGAA
LOC_Os10g20720
OsAffx.18314.1.S1_at--737--10651Chr10:10162048..10162072 (25 bp)
TTCCTGAGGATAATACTTTTGGGTT
LOC_Os10g20720
Target Sequence 
CGGCTCAGCAGGGAGACAAATCGATGGGTGGGTCCCACGTGCAGCACTTGAGCAGCTGCCTCTTGCAGGGGTGACATGGA
GGGTTTCCAGAAAAATAATCAGTCTTAAACTGAAAAAGGAAGATATATTACTTTCCAAAGGAACCGTTGGTGCAGCAAAG
AAATTGTTCTTTTTTCCTGAGGATAATACTTTTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis