Browse Element(s) Details


OsAffx.6711.1.S1_at

Description tigr:9638.m01716
TID=OsAffx.6711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2070011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20670OsAffx.27025.1.S1_at1/1110+10116880..10120351hypothetical protein
LOC_Os10g20670OsAffx.32166.1218.S1_x_at1/1110+10116880..10120351hypothetical protein
LOC_Os10g20680Os.38751.1.A1_at5/1110+10127408..10128682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20690OsAffx.30465.1.S1_at11/1110+10137535..10138304hypothetical protein
LOC_Os10g20690Os.54774.1.S1_x_at1/1110+10137535..10138304hypothetical protein
LOC_Os10g20700OsAffx.6711.1.S1_at11/1110+10142433..10143307hypothetical protein
LOC_Os10g20710OsAffx.18313.1.S1_at11/1110+10150657..10154558formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g20720OsAffx.18314.1.S1_at11/1110+10162017..10162413hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6711.1.S1_at--788--9311Chr10:10143236..10143260 (25 bp)
TCCCTCTTCTCGCATGATCGACGTA
LOC_Os10g20700
OsAffx.6711.1.S1_at--583--5771Chr10:10143221..10143245 (25 bp)
GATCGACGTACCACCGGCAGCGGTG
LOC_Os10g20700
OsAffx.6711.1.S1_at--441--1231Chr10:10142663..10143163 (25 bp)
AGTTCTCGACGCAAGCTCGGGAGAG
LOC_Os10g20700
OsAffx.6711.1.S1_at--258--2691Chr10:10142651..10142675 (25 bp)
AAGCTCGGGAGAGGCGAACCCTCCG
LOC_Os10g20700
OsAffx.6711.1.S1_at--122--5291Chr10:10142612..10142636 (25 bp)
GAAGGTAGACCCGACACCGATGTGC
LOC_Os10g20700
OsAffx.6711.1.S1_at--1032--5811Chr10:10142605..10142629 (25 bp)
GACCCGACACCGATGTGCTAGGGAG
LOC_Os10g20700
OsAffx.6711.1.S1_at--694--1051Chr10:10142580..10142604 (25 bp)
AGGTGTATCCAGACATGCCACGCGA
LOC_Os10g20700
OsAffx.6711.1.S1_at--499--1831Chr10:10142561..10142585 (25 bp)
ACGCGATTCCCTAGGTGGCTAGGTG
LOC_Os10g20700
OsAffx.6711.1.S1_at--839--4411Chr10:10142489..10142513 (25 bp)
GCCAGTGTTGGTGGGCCTCAGCAAT
LOC_Os10g20700
OsAffx.6711.1.S1_at--972--7471Chr10:10142479..10142503 (25 bp)
GTGGGCCTCAGCAATTGCATGACGA
LOC_Os10g20700
OsAffx.6711.1.S1_at--42--10731Chr10:10142465..10142489 (25 bp)
TTGCATGACGACAACGTCCGCTATG
LOC_Os10g20700
Target Sequence 
TCCCTCTTCTCGCATGATCGACGTACCACCGGCAGCGGTGGATGCCCTCCCATCCCCATGCCGCGACGGTGAGGGGCCAC
CGGCGGCGGGGAGGAGGAGTTCTCGACGCAAGCTCGGGAGAGGCGAACCCTCCGCCGGCGGGCCTGGGGAAGGTAGACCC
GACACCGATGTGCTAGGGAGAGGTGTATCCAGACATGCCACGCGATTCCCTAGGTGGCTAGGTGGGGCGATGGTGCTCAG
TGGTGGGGTGTGTTGGTGGTGGTCGATGAGCGCCAGTGTTGGTGGGCCTCAGCAATTGCATGACGACAACGTCCGCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis