Browse Element(s) Details


OsAffx.30465.1.S1_at

Description tigr:9638.m01715
TID=OsAffx.30465.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2069011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20660NANA10+10108177..10113353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g20670OsAffx.27025.1.S1_at1/1110+10116880..10120351hypothetical protein
LOC_Os10g20670OsAffx.32166.1218.S1_x_at1/1110+10116880..10120351hypothetical protein
LOC_Os10g20680Os.38751.1.A1_at5/1110+10127408..10128682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20690OsAffx.30465.1.S1_at11/1110+10137535..10138304hypothetical protein
LOC_Os10g20690Os.54774.1.S1_x_at1/1110+10137535..10138304hypothetical protein
LOC_Os10g20700OsAffx.6711.1.S1_at11/1110+10142433..10143307hypothetical protein
LOC_Os10g20710OsAffx.18313.1.S1_at11/1110+10150657..10154558formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g20720OsAffx.18314.1.S1_at11/1110+10162017..10162413hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30465.1.S1_at--66--9531Chr10:10137593..10137617 (25 bp)
TCTCTATCTTCTCTCTGTACTCTGG
LOC_Os10g20690
OsAffx.30465.1.S1_at--341--10171Chr10:10137597..10137621 (25 bp)
TATCTTCTCTCTGTACTCTGGGCAG
LOC_Os10g20690
OsAffx.30465.1.S1_at--695--8251Chr10:10137690..10137714 (25 bp)
GGCACCGGCGCCAGGGACGACAAGC
LOC_Os10g20690
OsAffx.30465.1.S1_at--339--2571Chr10:10137757..10137781 (25 bp)
AACGGGAGAGACTTCACGTCGGTAG
LOC_Os10g20690
OsAffx.30465.1.S1_at--66--1351Chr10:10137763..10137787 (25 bp)
AGAGACTTCACGTCGGTAGCGCCGG
LOC_Os10g20690
OsAffx.30465.1.S1_at--931--2031Chr10:10137767..10137791 (25 bp)
ACTTCACGTCGGTAGCGCCGGCGGC
LOC_Os10g20690
OsAffx.30465.1.S1_at--744--9372Chr10:10137920..10137944 (25 bp)
TCGAGCGGCAGCAAGAATGGTGGGC
LOC_Os10g20690
OsAffx.30465.1.S1_at--671--8651Chr10:10137940..10138227 (25 bp)
TGGGCGGCGGTCTTATTTAATTACA
LOC_Os10g20690
OsAffx.30465.1.S1_at--564--8351Chr10:10138211..10138232 (22 bp)
GGCGGTCTTATTTAATTACATTCCA
LOC_Os10g20690
OsAffx.30465.1.S1_at--81--10511Chr10:10138219..10138243 (25 bp)
TTAATTACATTCCAGAACTCAGCTG
LOC_Os10g20690
OsAffx.30465.1.S1_at--817--4711Chr10:10138240..10138264 (25 bp)
GCTGGAAATCTGATGTGACCATAGC
LOC_Os10g20690
Target Sequence 
TCTCTATCTTCTCTCTGTACTCTGGGCAGGCCGGCTTCATTGGCGGCGGCAACGTTGTCGGCGCCGCCTTGCACGACTGC
GACCGGTGCAGTGACGCGGCACCGGCGCCAGGGACGACAAGCGGGCGCGACGAACGGAGGAGGGCGAGGTTGAGGGTCTT
GAAGAACGGGAGAGACTTCACGTCGGTAGCGCCGGCGGCGGGACCCATGGCGGGCGGCGAGGTCCTTGGCGAGAGGCAAG
TGATGAGGTCGCGCGCGTCGGCGTCAGCGGGGCCGAACGACCTCGCCATCACCGGCTCGGCCATGCGGCCGAAGGGGTGG
CGCGGCGTCGAGCGGCAGCAAGAATGGTGGGCGGCGGTCTTATTTAATTACATTCCAGAACTCAGCTGGAAATCTGATGT
GACCATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis