Browse Element(s) Details


OsAffx.18313.1.S1_at

Description tigr:9638.m01717
TID=OsAffx.18313.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Formin Homology 2 Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2071011/11formin homology 2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20680Os.38751.1.A1_at5/1110+10127408..10128682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20690OsAffx.30465.1.S1_at11/1110+10137535..10138304hypothetical protein
LOC_Os10g20690Os.54774.1.S1_x_at1/1110+10137535..10138304hypothetical protein
LOC_Os10g20700OsAffx.6711.1.S1_at11/1110+10142433..10143307hypothetical protein
LOC_Os10g20710OsAffx.18313.1.S1_at11/1110+10150657..10154558formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g20720OsAffx.18314.1.S1_at11/1110+10162017..10162413hypothetical protein
LOC_Os10g20730OsAffx.18315.1.S1_at11/1110+10171932..10172324hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0016020cellular_componentmembrane
GO:0003779molecular_functionactin binding
GO:0005515molecular_functionprotein binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18313.1.S1_at--28--5511Chr10:10151160..10151184 (25 bp)
GAACAGCTGCGTCGACAGGGCCTAA
LOC_Os10g20710
OsAffx.18313.1.S1_at--955--8651Chr10:10151131..10151155 (25 bp)
TGTGTCTGGGTTGAGCACCGAGCTA
LOC_Os10g20710
OsAffx.18313.1.S1_at--935--1511Chr10:10151092..10151116 (25 bp)
AGCAGCAACCATGGACTTCGACGTG
LOC_Os10g20710
OsAffx.18313.1.S1_at--942--3931Chr10:10151071..10151095 (25 bp)
CGTGCTACACGGCTACGTATCTAAG
LOC_Os10g20710
OsAffx.18313.1.S1_at--1004--2831Chr10:10151022..10151046 (25 bp)
AAGTCAGTCCTCCAGCTCGAGAAGC
LOC_Os10g20710
OsAffx.18313.1.S1_at--532--7711Chr10:10150985..10151009 (25 bp)
GGGTGAATTTCTTCGCGACGATGCG
LOC_Os10g20710
OsAffx.18313.1.S1_at--733--1951Chr10:10150878..10150902 (25 bp)
ACTGAGTACTTCCACGGTAACGCGG
LOC_Os10g20710
OsAffx.18313.1.S1_at--1144--8611Chr10:10150820..10150844 (25 bp)
TGGTGGTTAGGGACTTCCTCTCAAT
LOC_Os10g20710
OsAffx.18313.1.S1_at--326--1171Chr10:10150774..10150798 (25 bp)
AGTCAGCCAGCAGGACAGGACATTT
LOC_Os10g20710
OsAffx.18313.1.S1_at--192--7271Chr10:10150735..10150759 (25 bp)
GTCCTTCCGTATATCAGCAGCAAAT
LOC_Os10g20710
OsAffx.18313.1.S1_at--219--2291Chr10:10150714..10150738 (25 bp)
AAATGCATTGCCGATCCTGAACATG
LOC_Os10g20710
Target Sequence 
GAACAGCTGCGTCGACAGGGCCTAAAAGTTGTGTCTGGGTTGAGCACCGAGCTAGGAAATGTCAAGAGAGCAGCAACCAT
GGACTTCGACGTGCTACACGGCTACGTATCTAAGCTTGAAGCCGGTCTTGGAAAGATCAAGTCAGTCCTCCAGCTCGAGA
AGCAATGCAGCCAAGGGGTGAATTTCTTCGCGACGATGCGTGAATTTCTCAAGGAAGCTGAGCAGGAGATCGAGCAAGTG
AGGCACGACGAGAAGGCGGCACTCGGAAGAGTGAAGGAGATCACTGAGTACTTCCACGGTAACGCGGTGAAGGAGGAGGC
ACACCCTCTGAGGATATTCATGGTGGTTAGGGACTTCCTCTCAATGCTGGATCATGTTTGCAGGGAAGTCAGCCAGCAGG
ACAGGACATTTGTTGGGTCAGCGAGGTCCTTCCGTATATCAGCAGCAAATGCATTGCCGATCCTGAACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis