Browse Element(s) Details


OsAffx.18315.1.S1_at

Description tigr:9638.m01719
TID=OsAffx.18315.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2073011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20710OsAffx.18313.1.S1_at11/1110+10150657..10154558formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g20720OsAffx.18314.1.S1_at11/1110+10162017..10162413hypothetical protein
LOC_Os10g20730OsAffx.18315.1.S1_at11/1110+10171932..10172324hypothetical protein
LOC_Os10g20740NANA10+10180442..10181477hypothetical protein
LOC_Os10g20750Os.46012.2.S1_x_at9/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.46012.3.S1_x_at5/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.27088.1.A1_x_at4/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.54691.1.S1_x_at1/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20759NANA10+10194322..10194775NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18315.1.S1_at--590--3311Chr10:10172020..10172044 (25 bp)
CACAGCGGCGCACACAAAGCGACGA
LOC_Os10g20730
OsAffx.18315.1.S1_at--1098--2191Chr10:10172033..10172057 (25 bp)
ACAAAGCGACGAGCCCATGCGGGTG
LOC_Os10g20730
OsAffx.18315.1.S1_at--88--4251Chr10:10172092..10172116 (25 bp)
CCGTAGCCAGCAGTGGTGTTCTTGA
LOC_Os10g20730
OsAffx.18315.1.S1_at--593--5831Chr10:10172115..10172139 (25 bp)
GACCGGCAAGATCGTGCGGGCGAGC
LOC_Os10g20730
OsAffx.18315.1.S1_at--414--5751Chr10:10172169..10172193 (25 bp)
GACGGTTCGATGGACGAAGTCAGTC
LOC_Os10g20730
OsAffx.18315.1.S1_at--489--8111Chr10:10172180..10172204 (25 bp)
GGACGAAGTCAGTCGCTGCCTGCAG
LOC_Os10g20730
OsAffx.18315.1.S1_at--85--3451Chr10:10172189..10172213 (25 bp)
CAGTCGCTGCCTGCAGCAGCGAGAG
LOC_Os10g20730
OsAffx.18315.1.S1_at--238--1631Chr10:10172212..10172236 (25 bp)
AGCGAGCGGCTATGGTGGCGTACTT
LOC_Os10g20730
OsAffx.18315.1.S1_at--61--8371Chr10:10172228..10172252 (25 bp)
GGCGTACTTGGATTTTGGCTCGCAT
LOC_Os10g20730
OsAffx.18315.1.S1_at--497--10411Chr10:10172240..10172264 (25 bp)
TTTTGGCTCGCATCTGGCACATGAT
LOC_Os10g20730
OsAffx.18315.1.S1_at--607--3911Chr10:10172253..10172277 (25 bp)
CTGGCACATGATGTGAGCGGGATCT
LOC_Os10g20730
Target Sequence 
CACAGCGGCGCACACAAAGCGACGAGCCCATGCGGGTGAGCGCGACAGCCGACGAGGCTGCAGCCCACAGCGCCGTAGCC
AGCAGTGGTGTTCTTGACCGGCAAGATCGTGCGGGCGAGCGTGGCGACCGACGATGCCATGGCAGCGAGGACGGTTCGAT
GGACGAAGTCAGTCGCTGCCTGCAGCAGCGAGAGCGAGCGGCTATGGTGGCGTACTTGGATTTTGGCTCGCATCTGGCAC
ATGATGTGAGCGGGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis