Browse Element(s) Details


Os.9890.1.S1_at

Description gb:AK066159.1
DB_XREF= gi:32976177
TID=Os.9890.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013051A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051A10, full insert sequence.
FL= gb:AK066159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g208309/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20780OsAffx.29946.1.S1_at5/119+12519956..12520243RNA recognition motif family protein
LOC_Os09g20790OsAffx.6349.1.S1_at11/119+12520761..12520997hypothetical protein
LOC_Os09g20800OsAffx.29947.1.S1_at2/119+12527112..12528106hypothetical protein
LOC_Os09g20810NANA9+12535620..12538846Strictosidine synthase family protein
LOC_Os09g20820OsAffx.6350.1.S1_at10/119+12539721..12543788Enolase, putative, expressed
LOC_Os09g20830Os.9890.1.S1_at9/119+12544956..12549095pentatricopeptide, putative, expressed
LOC_Os09g20840OsAffx.6351.1.S1_at11/119+12550172..12550639hypothetical protein
LOC_Os09g20850OsAffx.17807.1.S1_x_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.17807.1.S1_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.1.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.2.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20860OsAffx.17808.1.S1_s_at10/119+12557294..12560752expressed protein
LOC_Os09g20870NANA9+12562658..12563017hypothetical protein
LOC_Os09g20880Os.23225.1.A1_at11/119+12564502..12568201Protein kinase domain containing protein, expressed
LOC_Os09g20890OsAffx.17675.1.S1_at1/119+12572047..12572655retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9890.1.S1_at--666--5811Chr09:12545248..12545272 (25 bp)
GACCCAAGTTGTTCAGATACCGCTC
LOC_Os09g20830
Os.9890.1.S1_at--1029--1251Chr09:12545234..12545258 (25 bp)
AGATACCGCTCTACTTGTTCAAAAG
LOC_Os09g20830
Os.9890.1.S1_at--869--7051Chr09:12545210..12545234 (25 bp)
GTAACCCCATGATGCAAACCTTATA
LOC_Os09g20830
Os.9890.1.S1_at--905--5391Chr09:12545145..12545169 (25 bp)
GAAGCTATCGATTCTCAAATACGGA
LOC_Os09g20830
Os.9890.1.S1_at--817--5671Chr09:12545122..12545146 (25 bp)
GACATAAGTTTCATCGCTGCATTCA
LOC_Os09g20830
Os.9890.1.S1_at--468--4951Chr09:12545104..12545128 (25 bp)
GCATTCATACCTTTGGACTGCTATA
LOC_Os09g20830
Os.9890.1.S1_at--995--5711Chr09:12545089..12545113 (25 bp)
GACTGCTATATTCCGTTTTCTTTAA
LOC_Os09g20830
Os.9890.1.S1_at--1091--4011Chr09:12545076..12545100 (25 bp)
CGTTTTCTTTAACTGCACTGCACTA
LOC_Os09g20830
Os.9890.1.S1_at--225--6251Chr09:12544992..12545016 (25 bp)
GATGGGTACTGATGTGCCTACCAAG
LOC_Os09g20830
Os.9890.1.S1_at--269--3031Chr09:12544719..12544743 (25 bp)
AATGCCACAGATGTTTGCTTGCTGA
NONE
Os.9890.1.S1_at--26--4451Chr09:12544675..12544699 (25 bp)
GCCTTTTATAATGCTTCAGTTCGAG
NONE
Target Sequence 
GACCCAAGTTGTTCAGATACCGCTCTACTTGTTCAAAAGTAACCCCATGATGCAAACCTTATACTTGGTATATTGTAAAC
GGACACAATGCATTCTTTGTTTTGAAGCTATCGATTCTCAAATACGGACATAAGTTTCATCGCTGCATTCATACCTTTGG
ACTGCTATATTCCGTTTTCTTTAACTGCACTGCACTAGATGAAATGGGAACCAAGATCGATGAGCTGGAGCAGAGCGTCA
ACGNCCTGAAAGCTGAGATGGGTACTGATGTGCCTACCAAGAAGGCCGACGAGGCGAAGCCTGCCGACTCCACATAACTT
GGCCGCAGACCAGAGATTGGCCCGTAACGATTTGGCATCGGTGATGGATTTTTCAGCGTTTTATGTGTATCCGATATTAG
TTTTCTTGGACCATTGCTGTTGAATGACTCGAGAGTGATTTTATGCTATGAGCGTTCTCCTCTAGAGTATCTGCTGCTGC
TGCTGCTAAGGCGATGTGTTTGGCTTGTATGCAAATTTGATTTTAGCAGAATGCCACAGATGTTTGCTTGCTGATAACAA
GCCGCAGCTGNTNGCCTTTTATAATGCTTCAGTTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis