Browse Element(s) Details


OsAffx.17675.1.S1_at

Description tigr:9637.m01019
TID=OsAffx.17675.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1291011/11hypothetical protein
LOC_Os09g208901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12890OsAffx.22947.1.S1_x_at1/119+7418056..7423674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12900OsAffx.17674.1.S1_at11/119+7428162..7428774hypothetical protein
LOC_Os09g12900Os.52861.1.S1_at3/119+7428162..7428774hypothetical protein
LOC_Os09g12900OsAffx.20015.1.S1_x_at1/119+7428162..7428774hypothetical protein
LOC_Os09g12910OsAffx.17675.1.S1_at11/119+7437727..7438686hypothetical protein
LOC_Os09g12920OsAffx.17676.1.S1_at8/119+7443495..7443965hypothetical protein
LOC_Os09g12930Os.27639.1.S1_x_at9/119+7450933..7455160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12930OsAffx.8980.1.S1_at4/119+7450933..7455160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12940NANA9+7457405..7464079retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17675.1.S1_at--54--1091Chr09:7438010..7438034 (25 bp)
AGGGCGGAGTGTTGGCCGGGCATCC
LOC_Os09g12910
OsAffx.17675.1.S1_at--92--572Chr09:7438031..7438055 (25 bp)
ATCCTCACGGCCTTGCGAAGCTGAA
LOC_Os09g12910
OsAffx.17675.1.S1_at--1123--5311Chr09:7438053..7438077 (25 bp)
GAAGGTGGAGACAAGCTGGCCCCAC
LOC_Os09g12910
OsAffx.17675.1.S1_at--893--8531Chr09:7438058..7438082 (25 bp)
TGGAGACAAGCTGGCCCCACGTGGC
LOC_Os09g12910
OsAffx.17675.1.S1_at--212--2691Chr09:7438065..7438089 (25 bp)
AAGCTGGCCCCACGTGGCGTCCATA
LOC_Os09g12910
OsAffx.17675.1.S1_at--791--7531Chr09:7438078..7438102 (25 bp)
GTGGCGTCCATAGCCGGCGGCAAGC
LOC_Os09g12910
OsAffx.17675.1.S1_at--330--7771Chr09:7438182..7438206 (25 bp)
GGTCTTGCCCTTGCGGTTGCGAAGC
LOC_Os09g12910
OsAffx.17675.1.S1_at--990--4311Chr09:7438190..7438214 (25 bp)
CCTTGCGGTTGCGAAGCCAGTGGTG
LOC_Os09g12910
OsAffx.17675.1.S1_at--1113--6711Chr09:7438500..7438524 (25 bp)
GTTCGGCACGGCGATTCCGATAGCG
LOC_Os09g12910
OsAffx.17675.1.S1_at--64--8451Chr09:7438543..7438567 (25 bp)
GGCCATGCACACAACGGGAAACGGC
LOC_Os09g12910
OsAffx.17675.1.S1_at--293--7991Chr09:7438572..7438596 (25 bp)
GGAGCACTCCGGCAAGCGGCAGTGG
LOC_Os09g12910
Target Sequence 
AGGGCGGAGTGTTGGCCGGGCATCCTCACGGCCTTGCGAAGCTGAAGGTGGAGACAAGCTGGCCCCACGTGGCGTCCATA
GCCGGCGGCAAGCGGCTAGAGATGACGATGGCTCGGGGGTGCTCGGTGGAAGGGTGGTTGCGGCAGCGGATTGGGGAAAT
GGAGCGGTGGCCGGTCTTGCCCTTGCGGTTGCGAAGCCAGTGGTGGAGAGCAGGAGCGGTGGACGGGGTGCGCACGGTGG
CTGCGGTGCCGGGGAAGGCGATGGCGCACAGCGGGGTGGACGAGAGCGGTGGTGGTGCGCGGCTGGAGTCGGCGTCGGCG
GGGGAGAGAGGTGGTGCACGTGGTGGCGGCGTTTCGGGGTGGAAGGAGGGAAAAGGAGTAGAGGCCGGGGTGGAGTTCGG
CACGGCGATTCCGATAGCGGTGGCGGCGCAGCGCGGTGGCCATGCACACAACGGGAAACGGCGGCCGGAGCACTCCGGCA
AGCGGCAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis