Browse Element(s) Details


Os.23225.1.A1_at

Description gb:AK062323.1
DB_XREF= gi:32972341
TID=Os.23225.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D01, full insert sequence.
FL= gb:AK062323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2088011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20820OsAffx.6350.1.S1_at10/119+12539721..12543788Enolase, putative, expressed
LOC_Os09g20830Os.9890.1.S1_at9/119+12544956..12549095pentatricopeptide, putative, expressed
LOC_Os09g20840OsAffx.6351.1.S1_at11/119+12550172..12550639hypothetical protein
LOC_Os09g20850OsAffx.17807.1.S1_x_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.17807.1.S1_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.1.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.2.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20860OsAffx.17808.1.S1_s_at10/119+12557294..12560752expressed protein
LOC_Os09g20870NANA9+12562658..12563017hypothetical protein
LOC_Os09g20880Os.23225.1.A1_at11/119+12564502..12568201Protein kinase domain containing protein, expressed
LOC_Os09g20890OsAffx.17675.1.S1_at1/119+12572047..12572655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20900Os.18314.1.S1_at11/119+12579292..12581402RING-H2 finger protein ATL3I, putative, expressed
LOC_Os09g20910OsAffx.17810.1.S1_at10/119+12581818..12589897expressed protein
LOC_Os09g20910Os.49904.1.S1_x_at9/119+12581818..12589897expressed protein
LOC_Os09g20920OsAffx.29949.1.S1_x_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20920OsAffx.29949.1.S1_at1/119+12591735..12592166hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23225.1.A1_at--930--1071Chr09:12565077..12565101 (25 bp)
AGGGCACCCCGGAGCAGAACCTCAT
LOC_Os09g20880
Os.23225.1.A1_at--556--1751Chr09:12565059..12565083 (25 bp)
ACCTCATCGTGAGGATGCAGCAGGT
LOC_Os09g20880
Os.23225.1.A1_at--1136--5891Chr09:12564880..12564904 (25 bp)
GAGCTCCAGTTCATCATGTACGCCA
LOC_Os09g20880
Os.23225.1.A1_at--832--8751Chr09:12564864..12564888 (25 bp)
TGTACGCCAACATGAAGATCTGATC
LOC_Os09g20880
Os.23225.1.A1_at--981--2791Chr09:12564850..12564874 (25 bp)
AAGATCTGATCGCTGCATCCATTGC
LOC_Os09g20880
Os.23225.1.A1_at--717--431Chr09:12564823..12564847 (25 bp)
ATCTTCGTTTGGCTCGTTCATATCA
LOC_Os09g20880
Os.23225.1.A1_at--378--3191Chr09:12564800..12564824 (25 bp)
CAATCATTTGATTACTCCGGCGAAG
LOC_Os09g20880
Os.23225.1.A1_at--729--4691Chr09:12564694..12564718 (25 bp)
GCGGAATTTTCTGCCCAAAGTCCAG
LOC_Os09g20880
Os.23225.1.A1_at--1057--10571Chr09:12564627..12564651 (25 bp)
TTCTCACATATTTGTTCCTGTTGGA
LOC_Os09g20880
Os.23225.1.A1_at--1078--6691Chr09:12564614..12564638 (25 bp)
GTTCCTGTTGGAAATGACTCAAGCT
LOC_Os09g20880
Os.23225.1.A1_at--304--3351Chr09:12564510..12564534 (25 bp)
CACGTTGAATCTGAAGGCCAGGAAT
LOC_Os09g20880
Target Sequence 
AGGGCACCCCGGAGCAGAACCTCATCGTGAGGATGCAGCAGGTGTCCGGCGACCGGAAGCGGCTGCGCAAGGTGGTGGAC
AGGGACATGGNGAGGTCGTCCTACACGCCGGAGTCGGTGTCCATGTTCGCCGGCCTCGCCGCCCGCTGCGTCTGCTTCGA
GAGCGCCGGCCGCCCCTCCATGGCCGACTGCGTCAAGGAGCTCCAGTTCATCATGTACGCCAACATGAAGATCTGATCGC
TGCATCCATTGCCAATCTTCGTTTGGCTCGTTCATATCAATCATTTGATTACTCCGGCGAAGACGATGGCGGTGGAGAAG
AAGAAGAAGAAGATGATGATGATGATCTTGGTGTTTGTACAGAAANTTTTTTGTGGTTTTNTNGCGGAATTTTCTGCCCA
AAGTCCAGAGNAAAAAAAGAAAGAGNGGGGGCTTTGTGGTGGTATAAAAATTTCTCACATATTTGTTCCTGTTGGAAATG
ACTCAAGCTGAGGTAGCTAGAGNGAAATCATTTTTCTTTCAAAATTTGACTAATTAAACTTTGGNNNTANANTNGTGTGG
AAAGTGCNCACGTTGAATCTGAAGGCCAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23225.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis