Browse Element(s) Details


Os.18314.1.S1_at

Description gb:AK121433.1
DB_XREF= gi:37991056
TID=Os.18314.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138J18, full insert sequence.
FL= gb:AK059407.1 gb:AK121433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2090011/11RING-H2 finger protein ATL3I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20850OsAffx.17807.1.S1_x_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.17807.1.S1_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.1.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.2.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20860OsAffx.17808.1.S1_s_at10/119+12557294..12560752expressed protein
LOC_Os09g20870NANA9+12562658..12563017hypothetical protein
LOC_Os09g20880Os.23225.1.A1_at11/119+12564502..12568201Protein kinase domain containing protein, expressed
LOC_Os09g20890OsAffx.17675.1.S1_at1/119+12572047..12572655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20900Os.18314.1.S1_at11/119+12579292..12581402RING-H2 finger protein ATL3I, putative, expressed
LOC_Os09g20910OsAffx.17810.1.S1_at10/119+12581818..12589897expressed protein
LOC_Os09g20910Os.49904.1.S1_x_at9/119+12581818..12589897expressed protein
LOC_Os09g20920OsAffx.29949.1.S1_x_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20920OsAffx.29949.1.S1_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20930Os.7838.1.S1_at10/119+12599864..12601388expressed protein
LOC_Os09g20940NANA9+12605827..12606381hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18314.1.S1_at--934--6271Chr09:12579375..12579399 (25 bp)
GATGTACACGGACGAGTTCGCGCTC
LOC_Os09g20900
Os.18314.1.S1_at--477--3551Chr09:12580954..12580974 (21 bp)
CATCGGTGCATTGGTCACTGCTGGT
LOC_Os09g20900
Os.18314.1.S1_at--331--9691Chr09:12580964..12580988 (25 bp)
TCACTGCTGGTGTTCTGACGGCCGG
LOC_Os09g20900
Os.18314.1.S1_at--910--2911Chr09:12581057..12581081 (25 bp)
AAGGAGCGACGGTTGCTCTGATGAT
LOC_Os09g20900
Os.18314.1.S1_at--1025--3451Chr09:12581085..12581109 (25 bp)
CAGTGCCTACTACTACGGTGATCAA
LOC_Os09g20900
Os.18314.1.S1_at--939--2811Chr09:12581185..12581209 (25 bp)
AAGATTACGCTGTTCATTGTTCCTC
LOC_Os09g20900
Os.18314.1.S1_at--557--10491Chr09:12581223..12581247 (25 bp)
TTAACCATGTTGTTTTCGCCTGGCA
LOC_Os09g20900
Os.18314.1.S1_at--181--4171Chr09:12581239..12581263 (25 bp)
CGCCTGGCACGTGGTAGCTAACAAA
LOC_Os09g20900
Os.18314.1.S1_at--31--7951Chr09:12581279..12581303 (25 bp)
GGATTTGCGCAATTACTAGGCTTTG
LOC_Os09g20900
Os.18314.1.S1_at--1097--2691Chr09:12581310..12581334 (25 bp)
AAGCTTTTCTTTCGTCGACTTGACA
LOC_Os09g20900
Os.18314.1.S1_at--624--2191Chr09:12581357..12581381 (25 bp)
ACACAGCACTGTTAATCGAGCGAAT
LOC_Os09g20900
Target Sequence 
GATGTACACGGACGAGTTCGCGCTCGAGGGGANGAAGCCCGTCAAGAACCCCTTCGTCCCCATCGGTGCATTGGTCACTG
CTGGTGTTCTGACGGCCGGCCTGATCAGCTTCCNNGATATGGCNAACTCTAAACTGGGTCAGAAACTGATGAGGGCTCGT
GTGGTCGCTCAAGGAGCGACGGTTGCTCTGATGATCGGCAGTGCCTACTACTACGGTGATCAAATCAAGCTGTTCAAGAA
AGGGTCAAGCCCTTGAAGACAAGTACAGGAATCTTCATATCTATACTTAGTTTTGGGCAAGATTACGCTGTTCATTGTTC
CTCCAGCCATTGGGGTTTAACCATGTTGTTTTCGCCTGGCACGTGGTAGCTAACAAAAACAAGATCAGATTTGGATTTGC
GCAATTACTAGGCTTTGAATAAAAAGCTTTTCTTTCGTCGACTTGACACCAAGTTATGCATTGTATTGGAACACAGCACT
GTTAATCGAGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis