Browse Element(s) Details


Os.49904.1.S1_x_at

Description gb:AK119322.1
DB_XREF= gi:37988945
TID=Os.49904.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-A05, full insert sequence.
FL= gb:AK119322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g209109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20860OsAffx.17808.1.S1_s_at10/119+12557294..12560752expressed protein
LOC_Os09g20870NANA9+12562658..12563017hypothetical protein
LOC_Os09g20880Os.23225.1.A1_at11/119+12564502..12568201Protein kinase domain containing protein, expressed
LOC_Os09g20890OsAffx.17675.1.S1_at1/119+12572047..12572655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20900Os.18314.1.S1_at11/119+12579292..12581402RING-H2 finger protein ATL3I, putative, expressed
LOC_Os09g20910OsAffx.17810.1.S1_at10/119+12581818..12589897expressed protein
LOC_Os09g20910Os.49904.1.S1_x_at9/119+12581818..12589897expressed protein
LOC_Os09g20920OsAffx.29949.1.S1_x_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20920OsAffx.29949.1.S1_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20930Os.7838.1.S1_at10/119+12599864..12601388expressed protein
LOC_Os09g20940NANA9+12605827..12606381hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49904.1.S1_x_at--953--451Chr09:12585401..12585425 (25 bp)
ATCTCATGCATTCCTTCACTTGGTA
LOC_Os09g20910
Os.49904.1.S1_x_at--332--7831Chr09:12585380..12585404 (25 bp)
GGTAACTCCAAAGTGTATACGGCAA
LOC_Os09g20910
Os.49904.1.S1_x_at--880--9011Chr09:12585338..12585362 (25 bp)
TGCACACTAAGCTTTGGAACTACCA
LOC_Os09g20910
Os.49904.1.S1_x_at--23--3071Chr09:12585314..12585338 (25 bp)
AATCTTTGTGGTTCTCTAGTGTCTA
LOC_Os09g20910
Os.49904.1.S1_x_at--480--3711Chr09:12585299..12585323 (25 bp)
CTAGTGTCTATCTACTCTTGTGGAT
LOC_Os09g20910
Os.49904.1.S1_x_at--1032--1991Chr09:12585286..12585310 (25 bp)
ACTCTTGTGGATCAGTCAGTACTAT
LOC_Os09g20910
Os.49904.1.S1_x_at--320--251NONE
ATATCAGTCACTGCGGATCGGCGGC
NONE
Os.49904.1.S1_x_at--809--491Chr09:12585054..12585078 (25 bp)
ATCGGCGGCTACTATCTTCTTGAAT
LOC_Os09g20910
Os.49904.1.S1_x_at--460--431NONE
ATCTTCTTGAATGTTCCGCTGAAAG
NONE
Os.49904.1.S1_x_at--364--6551Chr09:12584948..12584972 (25 bp)
GATTTTGGAGTCTTGCTATTACATT
LOC_Os09g20910
Os.49904.1.S1_x_at--484--3191Chr09:12584886..12584910 (25 bp)
CAATCTATTGGAGTTTCTTCAGTGA
LOC_Os09g20910
Target Sequence 
ATCTCATGCATTCCTTCACTTGGTAACTCCAAAGTGTATACGGCAAAACCGTGTAATATTCTATGCACACTAAGCTTTGG
AACTACCAATCTTTGTGGTTCTCTAGTGTCTATCTACTCTTGTGGATCAGTCAGTACTATTGTAAACGATACTGTTTGTG
GCGAAAGAGATCACACTTTTAGGATTTTATTGGAATTTAAGGATGGAAGGTTTAAATATCAGTCACTGCGGATCGGCGGC
TACTATCTTCTTGAATGTTCCGCTGAAAGTATGAATTATTCCATGAAAGGCTGTGGATGTTTACAAATTAGTGAAGTTTC
ACTAGGTTATCAGAGTAGATTTTGGAGTCTTGCTATTACATTTAATGGTACTATAAATATAAAGCAGACCATTGGGGATC
AATCTATTGGAGTTTCTTCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49904.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis