Browse Element(s) Details


OsAffx.17810.1.S1_at

Description tigr:9637.m01792
TID=OsAffx.17810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL049482 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2091010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20860OsAffx.17808.1.S1_s_at10/119+12557294..12560752expressed protein
LOC_Os09g20870NANA9+12562658..12563017hypothetical protein
LOC_Os09g20880Os.23225.1.A1_at11/119+12564502..12568201Protein kinase domain containing protein, expressed
LOC_Os09g20890OsAffx.17675.1.S1_at1/119+12572047..12572655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20900Os.18314.1.S1_at11/119+12579292..12581402RING-H2 finger protein ATL3I, putative, expressed
LOC_Os09g20910OsAffx.17810.1.S1_at10/119+12581818..12589897expressed protein
LOC_Os09g20910Os.49904.1.S1_x_at9/119+12581818..12589897expressed protein
LOC_Os09g20920OsAffx.29949.1.S1_x_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20920OsAffx.29949.1.S1_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20930Os.7838.1.S1_at10/119+12599864..12601388expressed protein
LOC_Os09g20940NANA9+12605827..12606381hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17810.1.S1_at--371--10631Chr09:12583613..12583637 (25 bp)
TTCGTCACCCCACTAACATATATTG
LOC_Os09g20910
OsAffx.17810.1.S1_at--1006--571Chr09:12583257..12583281 (25 bp)
ATCCATGTGTTGGTTTTGGACGGCC
LOC_Os09g20910
OsAffx.17810.1.S1_at--813--3411NONE
CAGACTAGCCGGATTTATTGTTGAT
NONE
OsAffx.17810.1.S1_at--365--6251Chr09:12583004..12583028 (25 bp)
GATGGATCCTCTTTGTGCTGTTGCT
LOC_Os09g20910
OsAffx.17810.1.S1_at--756--5211Chr09:12582924..12582948 (25 bp)
GAATTCTTCTGTCACTTCGAGGTTT
LOC_Os09g20910
OsAffx.17810.1.S1_at--86--2151Chr09:12582876..12582900 (25 bp)
ACAGACTGTTGGTTCTTTTCTAGAA
LOC_Os09g20910
OsAffx.17810.1.S1_at--985--1391Chr09:12582818..12582842 (25 bp)
AGAAACTGTGGGATTCCTCCCGACA
LOC_Os09g20910
OsAffx.17810.1.S1_at--259--5671Chr09:12582797..12582821 (25 bp)
GACATCTCTTGTCGTGACTTGGAGT
LOC_Os09g20910
OsAffx.17810.1.S1_at--347--8551Chr09:12582778..12582802 (25 bp)
TGGAGTTGTCTTCTGTTCTCAATAA
LOC_Os09g20910
OsAffx.17810.1.S1_at--822--5911Chr09:12582338..12582358 (21 bp)
GAGCTTCCTAATTTACATCCAATGC
LOC_Os09g20910
OsAffx.17810.1.S1_at--370--591Chr09:12582007..12582342 (25 bp)
ATCCAATGCTTCGATGCACTGCTGA
LOC_Os09g20910
Target Sequence 
TTCGTCACCCCACTAACATATATTGAAGTTGTAACAATCCATGTGTTGGTTTTGGACGGCCTCCAACCCTCAAAATCAAG
ATGTGAAACAATAAATGTAAAAGTCAGACTAGCCGGATTTATTGTTGATGATGGATCCTCTTTGTGCTGTTGCTGGGCTG
ATGATGCAAGGGCTGAGTTGTTGCTCGGGCTGCAAGAGGTTGCAGTTATGAATTCTTCTGTCACTTCGAGGTTTTCAAAA
GATGGAGTAAACATCCAACAGACTGTTGGTTCTTTTCTAGAAAGTTTGTTAAAGAAGCACAAAAGTATCATTGCAAGAAA
CTGTGGGATTCCTCCCGACATCTCTTGTCGTGACTTGGAGTTGTCTTCTGTTCTCAATAAAGTCTTAAGTTGCTCAGAAG
AGAAACTTTTGAAATCTATCATACTGAATGCTTGTTGGAAGGGAACTTTGAATGTTATTGCATCAGCTTTAAATGCGAAC
ACGCTAAATGGATTTAATTTAGAGCTTCCTAATTTACATCCAATGCTTCGATGCACTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis