Browse Element(s) Details


OsAffx.17808.1.S1_s_at

Description tigr:9637.m01787
TID=OsAffx.17808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2086010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20810NANA9+12535620..12538846Strictosidine synthase family protein
LOC_Os09g20820OsAffx.6350.1.S1_at10/119+12539721..12543788Enolase, putative, expressed
LOC_Os09g20830Os.9890.1.S1_at9/119+12544956..12549095pentatricopeptide, putative, expressed
LOC_Os09g20840OsAffx.6351.1.S1_at11/119+12550172..12550639hypothetical protein
LOC_Os09g20850OsAffx.17807.1.S1_x_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.17807.1.S1_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.1.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.2.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20860OsAffx.17808.1.S1_s_at10/119+12557294..12560752expressed protein
LOC_Os09g20870NANA9+12562658..12563017hypothetical protein
LOC_Os09g20880Os.23225.1.A1_at11/119+12564502..12568201Protein kinase domain containing protein, expressed
LOC_Os09g20890OsAffx.17675.1.S1_at1/119+12572047..12572655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20900Os.18314.1.S1_at11/119+12579292..12581402RING-H2 finger protein ATL3I, putative, expressed
LOC_Os09g20910OsAffx.17810.1.S1_at10/119+12581818..12589897expressed protein
LOC_Os09g20910Os.49904.1.S1_x_at9/119+12581818..12589897expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17808.1.S1_s_at--903--3791Chr09:12560097..12560121 (25 bp)
CTGCTGCCCGTCTCCGGGTACGGGA
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--56--4251Chr09:12560090..12560114 (25 bp)
CCGTCTCCGGGTACGGGATGGATAT
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--938--1911Chr09:12560078..12560102 (25 bp)
ACGGGATGGATATCGCGTTGGTGGA
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--790--5851NONE
GAGCCGACTGAGAGGTGTTGTTAAT
NONE
OsAffx.17808.1.S1_s_at--620--3851Chr09:12557561..12557580 (20 bp)
CTGAGAGGTGTTGTTAATCTGTACA
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--168--6151Chr09:12557557..12557580 (24 bp)
GAGGTGTTGTTAATCTGTACAATTT
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--958--1531Chr09:12557528..12557552 (25 bp)
AGCATCCTGGGTGGACAATCATATT
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--204--9271Chr09:12557524..12557548 (25 bp)
TCCTGGGTGGACAATCATATTTGAC
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--469--8631Chr09:12557521..12557545 (25 bp)
TGGGTGGACAATCATATTTGACAAG
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--302--5611Chr09:12557502..12557526 (25 bp)
GACAAGGACATGATAATTATTTTCG
LOC_Os09g20860
OsAffx.17808.1.S1_s_at--314--8831Chr09:12557492..12557516 (25 bp)
TGATAATTATTTTCGTTGTCCTTTT
LOC_Os09g20860
Target Sequence 
CTGCTGCCCGTCTCCGGGTACGGGATGGATATCGCGTTGGTGGAGGTCGGCCCGGTGGTGAGGGAGCTCGTGTCCTACCC
TCTCGGCGGCAGCGGCGGCGCTGGAGCCGACTGAGAGGTGTTGTTAATCTGTACAATTTGAAGAGCATCCTGGGTGGACA
ATCATATTTGACAAGGACATGATAATTATTTTCGTTGTCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17808.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis