Browse Element(s) Details


OsAffx.17807.1.S1_x_at

Description tigr:9637.m01786
TID=OsAffx.17807.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2085011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20810NANA9+12535620..12538846Strictosidine synthase family protein
LOC_Os09g20820OsAffx.6350.1.S1_at10/119+12539721..12543788Enolase, putative, expressed
LOC_Os09g20830Os.9890.1.S1_at9/119+12544956..12549095pentatricopeptide, putative, expressed
LOC_Os09g20840OsAffx.6351.1.S1_at11/119+12550172..12550639hypothetical protein
LOC_Os09g20850OsAffx.17807.1.S1_x_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.17807.1.S1_at11/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.1.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20850OsAffx.15454.2.S1_x_at1/119+12554489..12555826expressed protein
LOC_Os09g20860OsAffx.17808.1.S1_s_at10/119+12557294..12560752expressed protein
LOC_Os09g20870NANA9+12562658..12563017hypothetical protein
LOC_Os09g20880Os.23225.1.A1_at11/119+12564502..12568201Protein kinase domain containing protein, expressed
LOC_Os09g20890OsAffx.17675.1.S1_at1/119+12572047..12572655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20900Os.18314.1.S1_at11/119+12579292..12581402RING-H2 finger protein ATL3I, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17807.1.S1_x_at--569--9131Chr09:12555308..12555332 (25 bp)
TGCCCGGAGCCGAACCGGACGGAGA
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--218--7671Chr09:12555335..12555359 (25 bp)
GGGTTCTTCGGCGTGTTCCGCCTCG
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--975--9711Chr09:12555363..12555387 (25 bp)
TCAAGAACGCCCTCCGCGAGGTCAT
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--1105--2671Chr09:12555422..12555446 (25 bp)
AAGCTCGCCGTGGTGACGACGTTCT
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--918--4651Chr09:12555485..12555509 (25 bp)
GCGTGCGCGCGGTCGGAGCCGTACG
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--945--7551Chr09:12555677..12555701 (25 bp)
GGGCCGTACATGAACGCGTTCCCGT
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--1054--8411Chr09:12555678..12555702 (25 bp)
GGCCGTACATGAACGCGTTCCCGTT
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--483--2111Chr09:12555684..12555708 (25 bp)
ACATGAACGCGTTCCCGTTCGCCGG
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--978--3531Chr09:12555763..12555787 (25 bp)
CATCGACACGTGGAACGAGATCCTC
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--214--9371Chr09:12555765..12555789 (25 bp)
TCGACACGTGGAACGAGATCCTCCT
LOC_Os09g20850
OsAffx.17807.1.S1_x_at--196--4111Chr09:12555766..12555790 (25 bp)
CGACACGTGGAACGAGATCCTCCTC
LOC_Os09g20850
Target Sequence 
TGCCCGGAGCCGAACCGGACGGAGACGGGGTTCTTCGGCGTGTTCCGCCTCGCCGTCAAGAACGCCCTCCGCGAGGTCAT
CACCCGCGCCGCCCGCTCCCCGTCGCAGCAGCAGAAGCTCGCCGTGGTGACGACGTTCTCGCCGGCGCACTTCGAGGGGG
AGTGGGACGCGCGCGACGCGTGCGCGCGGTCGGAGCCGTACGCGCCGGGGGAGAAGGAGGTGGGGTACATGGACCGGGAG
ATGGGGCGCGCGGAGGCGGAGGAGGTGGCGGCGGCGGCGGCGGACGCGAGGGTGCGCGCCCCCGGTCGCGTGGAGGTGGA
GGCGCTGGAGGTGACGGCGATGGCGGCGCTGCGCGGCGACGGGCACCCGGGGCCGTACATGAACGCGTTCCCGTTCGCCG
GCGGCGAGAGGGCGCGGGTGCCCAACGACTGCGTGCACTGGTGCCTCCCGGGCCCCATCGACACGTGGAACGAGATCCTC
CTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17807.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis