Browse Element(s) Details


OsAffx.2995.1.S1_at

Description tigr:9630.m04681
TID=OsAffx.2995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4805011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48020OsAffx.24774.1.S1_at11/112+29390261..29390748hypothetical protein
LOC_Os02g48030NANA2+29394455..29395504hypothetical protein
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein
LOC_Os02g48050OsAffx.2995.1.S1_at11/112+29409281..29410874hypothetical protein
LOC_Os02g48050OsAffx.5258.1.S1_x_at2/112+29409281..29410874hypothetical protein
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g48070OsAffx.24775.1.S1_at11/112+29421140..29421424hypothetical protein
LOC_Os02g48080Os.16139.1.S1_at10/112+29423895..29426578Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os02g48090OsAffx.12545.1.S1_at11/112+29428158..29428742hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2995.1.S1_at--1150--731Chr02:29410681..29410705 (25 bp)
ATGTTATTCCATCTCATATCATATG
LOC_Os02g48050
OsAffx.2995.1.S1_at--680--231Chr02:29410696..29410720 (25 bp)
ATATCATATGGATCCGGCCTACCTT
LOC_Os02g48050
OsAffx.2995.1.S1_at--1136--8411Chr02:29410711..29410735 (25 bp)
GGCCTACCTTCTATCTTAGTCGATA
LOC_Os02g48050
OsAffx.2995.1.S1_at--12--451Chr02:29410723..29410747 (25 bp)
ATCTTAGTCGATATGCAGGCCATAT
LOC_Os02g48050
OsAffx.2995.1.S1_at--1036--3471Chr02:29410738..29410762 (25 bp)
CAGGCCATATGGGTATCTGGTATCC
LOC_Os02g48050
OsAffx.2995.1.S1_at--236--7691Chr02:29410748..29410772 (25 bp)
GGGTATCTGGTATCCAACTATCTAT
LOC_Os02g48050
OsAffx.2995.1.S1_at--490--2531Chr02:29410763..29410787 (25 bp)
AACTATCTATACTCTGCAAGCCAAG
LOC_Os02g48050
OsAffx.2995.1.S1_at--1078--5151Chr02:29410778..29410802 (25 bp)
GCAAGCCAAGACACAACAATCATAT
LOC_Os02g48050
OsAffx.2995.1.S1_at--631--2231Chr02:29410793..29410817 (25 bp)
ACAATCATATGCCACCGCAAGTCGA
LOC_Os02g48050
OsAffx.2995.1.S1_at--178--9211Chr02:29410802..29410826 (25 bp)
TGCCACCGCAAGTCGATATGTCGTT
LOC_Os02g48050
OsAffx.2995.1.S1_at--688--8711Chr02:29410820..29410844 (25 bp)
TGTCGTTGAGTCAGAGATCAAGCCT
LOC_Os02g48050
Target Sequence 
ATGTTATTCCATCTCATATCATATGGATCCGGCCTACCTTCTATCTTAGTCGATATGCAGGCCATATGGGTATCTGGTAT
CCAACTATCTATACTCTGCAAGCCAAGACACAACAATCATATGCCACCGCAAGTCGATATGTCGTTGAGTCAGAGATCAA
GCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis