Browse Element(s) Details


OsAffx.29958.1.S1_x_at

Description tigr:9637.m01821
TID=OsAffx.29958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=homeobox protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2118011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21140OsAffx.17819.1.S1_at11/119+12757361..12757741hypothetical protein
LOC_Os09g21150OsAffx.17820.1.S1_at11/119+12760129..12762148hypothetical protein
LOC_Os09g21160OsAffx.29957.2.S1_s_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21160OsAffx.29957.1.S1_x_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21160OsAffx.29957.1.S1_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21170OsAffx.29957.2.S1_s_at11/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21170OsAffx.29957.1.S1_x_at1/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21180OsAffx.29958.1.S1_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21180OsAffx.29958.1.S1_x_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21189OsAffx.8939.1.S1_x_at5/119+12787909..12788698NA
LOC_Os09g21189OsAffx.8939.1.S1_at2/119+12787909..12788698NA
LOC_Os09g21200NANA9+12789271..12791761hypothetical protein
LOC_Os09g21210Os.6405.1.S1_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21210Os.6405.1.S2_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29958.1.S1_x_at--690--1651Chr09:12780217..12780241 (25 bp)
AGCCGCACCTGAAAGCGCCAAGTCG
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--565--2671Chr09:12780205..12780229 (25 bp)
AAGCGCCAAGTCGTTTCAGCTCGAA
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--581--10311Chr09:12780192..12780216 (25 bp)
TTTCAGCTCGAAGAAGGTCGCCGCC
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--117--5171Chr09:12780087..12780111 (25 bp)
GCAAGAGCGGCCAGCAACGACAGCC
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--53--4211Chr09:12779883..12779907 (25 bp)
CCGCTAAACAGCTGGGAGTGGTTCT
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--1098--7891Chr09:12779864..12779888 (25 bp)
GGTTCTGGAATTGATCGAGTGATAT
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--753--6391Chr09:12779852..12779876 (25 bp)
GATCGAGTGATATCTCTGGCTGGGA
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--25--3791Chr09:12779839..12779863 (25 bp)
CTCTGGCTGGGATTTTCTATGTTTA
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--930--9231Chr09:12779787..12779811 (25 bp)
TCCTTTTATATTCCTTTTTTATGCT
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--1031--10651Chr09:12779777..12779801 (25 bp)
TTCCTTTTTTATGCTTGGTTACTAG
LOC_Os09g21180
OsAffx.29958.1.S1_x_at--961--4931Chr09:12779765..12779789 (25 bp)
GCTTGGTTACTAGCAATATGATGCT
LOC_Os09g21180
Target Sequence 
AGCCGCACCTGAAAGCGCCAAGTCGTTTCAGCTCGAAGAAGGTCGCCGCCTCTACGACGCCGCCGGGAGCACCACCACCA
CCAACGGCGGCGGCGGCGGCGTCGCGATGCCGGCGGCGCGCGTGGCGGCGGCAAGAGCGGCCAGCAACGACAGCCCCGAG
TCCTACTTCGCCGGCGCTCGCTCGCCGCCCTCGTCGTCGGAGGACGACTGCGGCGGCGCCGGCAGCGACGACGACTACCC
CTCTTCCTCCGTCTTACTCCCGGTCGACGCTACGCTCGTCGGCGACGCCTTCGAGCACGCCGTGGCGGCGACGGTGGCGG
CGGATGAGGAGGCGCCGCTAAACAGCTGGGAGTGGTTCTGGAATTGATCGAGTGATATCTCTGGCTGGGATTTTCTATGT
TTATATTCCTTTTTTATTCCTTTTTTATATTCCTTTTATATTCCTTTTTTATGCTTGGTTACTAGCAATATGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29958.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis