Browse Element(s) Details


OsAffx.29986.1.S1_at

Description tigr:9637.m02001
TID=OsAffx.29986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2341010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23380Os.27823.1.S1_at11/119+13890808..13896338RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os09g23390OsAffx.29985.1.S1_at11/119+13900842..13901812hypothetical protein
LOC_Os09g23400NANA9+13907220..13908604hypothetical protein
LOC_Os09g23410OsAffx.29986.1.S1_at10/119+13915019..13917896hypothetical protein
LOC_Os09g23420OsAffx.6373.1.S1_at11/119+13918743..13919868hypothetical protein
LOC_Os09g23430OsAffx.29987.1.S1_at11/119+13924466..13924666hypothetical protein
LOC_Os09g23440NANA9+13931139..13931372hypothetical protein
LOC_Os09g23450NANA9+13936074..13936307hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29986.1.S1_at--1066--4331Chr09:13917775..13917799 (25 bp)
CCAGAGTGGCAGAGCTCACGGCGAC
LOC_Os09g23410
OsAffx.29986.1.S1_at--661--7091NONE
GTCAAACATTTATGTCGAGACTGGT
NONE
OsAffx.29986.1.S1_at--84--5471Chr09:13916191..13916215 (25 bp)
GAACTGAAAGAGACTAAGGCTGAAC
LOC_Os09g23410
OsAffx.29986.1.S1_at--952--3731Chr09:13916178..13916202 (25 bp)
CTAAGGCTGAACTTGCCGATACAAA
LOC_Os09g23410
OsAffx.29986.1.S1_at--540--4951Chr09:13916146..13916170 (25 bp)
GCATATGTGGCTATTCTTAAAGAGC
LOC_Os09g23410
OsAffx.29986.1.S1_at--1161--8171Chr09:13915983..13916007 (25 bp)
GGAAGCCGAGAGAACCAAAGCTAAA
LOC_Os09g23410
OsAffx.29986.1.S1_at--175--2151Chr09:13915930..13915954 (25 bp)
ACAGAATCAAGTTGTCCTGGATGTC
LOC_Os09g23410
OsAffx.29986.1.S1_at--772--6631Chr09:13915924..13915944 (21 bp)
GTTGTCCTGGATGTCAGCAAGTCAA
LOC_Os09g23410
OsAffx.29986.1.S1_at--173--2851Chr09:13915167..13915191 (25 bp)
AAGTCAAAGAGTTGGCCCAGGCTAA
LOC_Os09g23410
OsAffx.29986.1.S1_at--156--10871Chr09:13915156..13915180 (25 bp)
TTGGCCCAGGCTAAGCTTGCAGAAT
LOC_Os09g23410
OsAffx.29986.1.S1_at--399--1351Chr09:13915097..13915121 (25 bp)
AGAGATGTCTCAAACTCAAGCAGTT
LOC_Os09g23410
Target Sequence 
CCAGAGTGGCAGAGCTCACGGCGACGATGGCTGGCCGTCGGAAGGCGCGGCAGCGACTGGGCGGCATGGTCAGCGACGGC
GGAGGCACGAATGGTCAAACATTTATGTCGAGACTGGTAAAGAAGAACACAATTGAAACAAAAGAGGAACTGAAAGAGGG
TATGGCTGAGAGAAAAGAGGAACTGAAAGAGACTAAGGCTGAACTTGCCGATACAAAAAGGGTAGCATATGTGGCTATTC
TTAAAGAGCAAGGAAACAAAAAGGAGAGTTTTTCATATAGGGAATTAAAATCCTTCCAAGGAAATAAGATGCGAAGAGGA
GGGCTATGGAAGCCGAGAGAACCAAAGCTAAAGAAGCAAAGGATAAGGAATATGCGAAAAACAGAATCAAGTTGTCCTGG
ATGTCAGCAAGTCAAAGAGTTGGCCCAGGCTAAGCTTGCAGAATTAAGATGGAAAAAAGAGGAGGAGAACAAAGCCATAG
AGATGTCTCAAACTCAAGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis