Browse Element(s) Details


OsAffx.29985.1.S1_at

Description tigr:9637.m01999
TID=OsAffx.29985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2339011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23350Os.15914.1.S1_at11/119+13874998..13878642glycosyl transferase family 20 protein, putative, expressed
LOC_Os09g23360Os.51840.1.S1_at11/119+13879664..13882886expressed protein
LOC_Os09g23370Os.16406.1.S1_at11/119+13886390..13889111expressed protein
LOC_Os09g23370Os.16406.2.S1_at9/119+13886390..13889111expressed protein
LOC_Os09g23380Os.27823.1.S1_at11/119+13890808..13896338RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os09g23390OsAffx.29985.1.S1_at11/119+13900842..13901812hypothetical protein
LOC_Os09g23400NANA9+13907220..13908604hypothetical protein
LOC_Os09g23410OsAffx.29986.1.S1_at10/119+13915019..13917896hypothetical protein
LOC_Os09g23420OsAffx.6373.1.S1_at11/119+13918743..13919868hypothetical protein
LOC_Os09g23430OsAffx.29987.1.S1_at11/119+13924466..13924666hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29985.1.S1_at--331--7811Chr09:13901733..13901757 (25 bp)
GGTCTGACCAATGCATCGGTGGCCG
LOC_Os09g23390
OsAffx.29985.1.S1_at--683--1911Chr09:13901644..13901668 (25 bp)
ACGGTTGCTTCTGGCTTGGTAAACA
LOC_Os09g23390
OsAffx.29985.1.S1_at--304--7691Chr09:13901613..13901637 (25 bp)
GGGTTTCTGACATCCGCGATGCCCT
LOC_Os09g23390
OsAffx.29985.1.S1_at--202--1971Chr09:13901286..13901611 (25 bp)
ACTGTCCCGCATCTTGAGACGGCGA
LOC_Os09g23390
OsAffx.29985.1.S1_at--618--3833Chr06:23707912..23708148 (25 bp)
CTGCGTGTTCGCTCGTGGTTCTGGA
NONE
OsAffx.29985.1.S1_at--405--271Chr09:13900959..13900983 (25 bp)
ATATGTGGTCTTTAACTGGCGTTGC
LOC_Os09g23390
OsAffx.29985.1.S1_at--716--9811Chr09:13900947..13900971 (25 bp)
TAACTGGCGTTGCTGCTTTTGGAGA
LOC_Os09g23390
OsAffx.29985.1.S1_at--966--10831Chr09:13900918..13900942 (25 bp)
TTGGGAGTTTAGCATGTTTTGCCCC
LOC_Os09g23390
OsAffx.29985.1.S1_at--275--4171Chr09:13900895..13900919 (25 bp)
CCCTTCCTACTGATCGGAGTTGAGT
LOC_Os09g23390
OsAffx.29985.1.S1_at--981--6031Chr09:13900879..13900903 (25 bp)
GAGTTGAGTTTAGCCTCCGTAGACA
LOC_Os09g23390
OsAffx.29985.1.S1_at--260--6831Chr09:13900872..13900896 (25 bp)
GTTTAGCCTCCGTAGACAGATTTTG
LOC_Os09g23390
Target Sequence 
GGTCTGACCAATGCATCGGTGGCCGCTCGGTGGCCTTCTTGGCTCCAGATCTCCTCTTCACCGTGCTCCAGTGCCTCTGG
GGTTCGCGCACGGTTGCTTCTGGCTTGGTAAACAATTCCTGGGTTTCTGACATCCGCGATGCCCTCACTGTCCCGCATCT
TGAGACGGCGAACCATATCCTTCTCGACTGCGTGTTCGCTCGTGGTTCTGGAGTCCATTCTCTCAGAGGGCCATATGTGG
TCTTTAACTGGCGTTGCTGCTTTTGGAGATTTCTTGGGAGTTTAGCATGTTTTGCCCCCTTCCTACTGATCGGAGTTGAG
TTTAGCCTCCGTAGACAGATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis