Browse Element(s) Details


Os.16406.2.S1_at

Description gb:AK108004.1
DB_XREF= gi:32993213
TID=Os.16406.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-G09, full insert sequence.
FL= gb:AK108004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g233709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23350Os.15914.1.S1_at11/119+13874998..13878642glycosyl transferase family 20 protein, putative, expressed
LOC_Os09g23360Os.51840.1.S1_at11/119+13879664..13882886expressed protein
LOC_Os09g23370Os.16406.1.S1_at11/119+13886390..13889111expressed protein
LOC_Os09g23370Os.16406.2.S1_at9/119+13886390..13889111expressed protein
LOC_Os09g23380Os.27823.1.S1_at11/119+13890808..13896338RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os09g23390OsAffx.29985.1.S1_at11/119+13900842..13901812hypothetical protein
LOC_Os09g23400NANA9+13907220..13908604hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16406.2.S1_at--697--6251NONE
GATGGTCGCTGGATGCAACACGCGT
NONE
Os.16406.2.S1_at--609--2471Chr09:13886646..13886670 (25 bp)
AACACGCGTTGGTGATCTTTCTTTC
LOC_Os09g23370
Os.16406.2.S1_at--731--3671Chr09:13886630..13886654 (25 bp)
CTTTCTTTCGGTGTCTGAAGTGGCT
LOC_Os09g23370
Os.16406.2.S1_at--553--5271Chr09:13886596..13886620 (25 bp)
GAATGAACAATTCCTGTGGGAGCAA
LOC_Os09g23370
Os.16406.2.S1_at--516--331Chr09:13886562..13886586 (25 bp)
ATAAAAGTGCCAGGTCACGTCCCTA
LOC_Os09g23370
Os.16406.2.S1_at--182--7011Chr09:13886549..13886573 (25 bp)
GTCACGTCCCTAGCTTTTGAAGGAT
LOC_Os09g23370
Os.16406.2.S1_at--143--5431Chr09:13886518..13886542 (25 bp)
GAAGCCATGGATACCGAGCTCCACT
LOC_Os09g23370
Os.16406.2.S1_at--433--4791Chr09:13886501..13886525 (25 bp)
GCTCCACTTTCGGTTGTGGCAGTGA
LOC_Os09g23370
Os.16406.2.S1_at--168--5031Chr09:13886483..13886507 (25 bp)
GCAGTGACTCACTGGATCGAGCAAC
LOC_Os09g23370
Os.16406.2.S1_at--908--7451Chr09:13886441..13886465 (25 bp)
GTGGTTGTGGAAGCCGTTGTCCAAA
LOC_Os09g23370
Os.16406.2.S1_at--449--9071NONE
TGCTTACAAATGATTGCCCATGGTT
NONE
Target Sequence 
GATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCC
TGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCG
AGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAAACTTGGTGTTTGTGGTTGTGGAAGCCGTTG
TCCAAATGCTAAATTGCCAAGTTGGAAGCCATATGCTTACAAATGATTGCCCATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16406.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis