Browse Element(s) Details


Os.16406.1.S1_at

Description gb:AK111009.1
DB_XREF= gi:32996218
TID=Os.16406.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-F08, full insert sequence.
FL= gb:AK111009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2337011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23350Os.15914.1.S1_at11/119+13874998..13878642glycosyl transferase family 20 protein, putative, expressed
LOC_Os09g23360Os.51840.1.S1_at11/119+13879664..13882886expressed protein
LOC_Os09g23370Os.16406.1.S1_at11/119+13886390..13889111expressed protein
LOC_Os09g23370Os.16406.2.S1_at9/119+13886390..13889111expressed protein
LOC_Os09g23380Os.27823.1.S1_at11/119+13890808..13896338RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os09g23390OsAffx.29985.1.S1_at11/119+13900842..13901812hypothetical protein
LOC_Os09g23400NANA9+13907220..13908604hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16406.1.S1_at--828--7391Chr09:13888580..13888604 (25 bp)
GTGATGGTCGCTGGGTAAGTTCCTC
LOC_Os09g23370
Os.16406.1.S1_at--1048--811Chr09:13888577..13888601 (25 bp)
ATGGTCGCTGGGTAAGTTCCTCTCC
LOC_Os09g23370
Os.16406.1.S1_at--353--4211Chr09:13888551..13888575 (25 bp)
CCCCTTTCTGTTGTATTGTGAGCTT
LOC_Os09g23370
Os.16406.1.S1_at--1045--8671Chr09:13888535..13888559 (25 bp)
TGTGAGCTTCTTTAGTATCAAAAAT
LOC_Os09g23370
Os.16406.1.S1_at--1013--2471Chr09:13888493..13888517 (25 bp)
AACACCAATCGATATGGAGATATGT
LOC_Os09g23370
Os.16406.1.S1_at--22--2091Chr09:13888448..13888472 (25 bp)
ACATATCTGTGTTGCAATTGGTGAT
LOC_Os09g23370
Os.16406.1.S1_at--1089--8551Chr09:13888422..13888446 (25 bp)
TGGATGTTTAATTTGCTGCTTTCTC
LOC_Os09g23370
Os.16406.1.S1_at--935--3111Chr09:13888413..13888437 (25 bp)
AATTTGCTGCTTTCTCATGTTCAAT
LOC_Os09g23370
Os.16406.1.S1_at--881--3751Chr09:13888400..13888424 (25 bp)
CTCATGTTCAATTCGACTGTCTTAA
LOC_Os09g23370
Os.16406.1.S1_at--294--8891Chr09:13888348..13888372 (25 bp)
TGAGGATATGCTTTCGTGTGGTGTA
LOC_Os09g23370
Os.16406.1.S1_at--576--8671Chr09:13888332..13888356 (25 bp)
TGTGGTGTATATCCAATGTGTACGA
LOC_Os09g23370
Target Sequence 
GTGATGGTCGCTGGGTAAGTTCCTCTCCCCCCCTTTCTGTTGTATTGTGAGCTTCTTTAGTATCAAAAATTATGTGATAA
TAAATGAAACACCAATCGATATGGAGATATGTGCAATATGTGTTAATTAACTACATATCTGTGTTGCAATTGGTGATTTG
GATGTTTAATTTGCTGCTTTCTCATGTTCAATTCGACTGTCTTAAAATGAAATTGAGACTAGAAGAAGGATATGAGGATA
TGCTTTCGTGTGGTGTATATCCAATGTGTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis