Browse Element(s) Details


OsAffx.29996.1.S1_at

Description tigr:9637.m02078
TID=OsAffx.29996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2428010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24270NANA9+14418039..14420842retrotransposon protein, putative, unclassified
LOC_Os09g24280OsAffx.29996.1.S1_at10/119+14423811..14425809hypothetical protein
LOC_Os09g24290OsAffx.30543.2.S1_x_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24290OsAffx.30543.2.S1_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24300NANA9+14440360..14440806hypothetical protein
LOC_Os09g24310OsAffx.30543.2.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.3.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.2.S1_x_at3/119+14444601..14453034heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29996.1.S1_at--315--9471Chr09:14423955..14423979 (25 bp)
TCTGGTGGTGATTCCTCTCGATGGG
LOC_Os09g24280
OsAffx.29996.1.S1_at--182--7671Chr09:14423978..14424002 (25 bp)
GGGATACCTTGTTGCACTTACCTCT
LOC_Os09g24280
OsAffx.29996.1.S1_at--342--6671Chr09:14423988..14424012 (25 bp)
GTTGCACTTACCTCTGGTGATCATT
LOC_Os09g24280
OsAffx.29996.1.S1_at--134--9471Chr09:14424000..14424024 (25 bp)
TCTGGTGATCATTTCCTATTTGACA
LOC_Os09g24280
OsAffx.29996.1.S1_at--631--2251NONE
AAATCAACAAGGCTAGTCGATCTAT
NONE
OsAffx.29996.1.S1_at--306--1151Chr09:14424561..14424585 (25 bp)
AGTCGATCTATACTATGGTAACGAT
LOC_Os09g24280
OsAffx.29996.1.S1_at--598--6591Chr09:14424601..14424625 (25 bp)
GATTGCACTAGTTATAACTTGTCCA
LOC_Os09g24280
OsAffx.29996.1.S1_at--107--332Chr09:14424614..14424637 (24 bp)
ATAACTTGTCCATCCGAAAGGTGTG
LOC_Os09g24280
OsAffx.29996.1.S1_at--716--1051Chr09:14425725..14425745 (21 bp)
AGGTGTGGTGCAACTATCTTTCAAT
LOC_Os09g24280
OsAffx.29996.1.S1_at--1145--431Chr09:14425736..14425760 (25 bp)
ATCTTTCAATGATCAAACCATGGGA
LOC_Os09g24280
OsAffx.29996.1.S1_at--299--791Chr09:14425755..14425779 (25 bp)
ATGGGATATCACCATTACCCAACTA
LOC_Os09g24280
Target Sequence 
TCTGGTGGTGATTCCTCTCGATGGGGATACCTTGTTGCACTTACCTCTGGTGATCATTTCCTATTTGACAAATCAACAAG
GCTAGTCGATCTATACTATGGTAACGATCCAATGATCTTAATAGATTGCACTAGTTATAACTTGTCCATCCGAAAGGTGT
GGTGCAACTATCTTTCAATGATCAAACCATGGGATATCACCATTACCCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis