Browse Element(s) Details


Os.20194.1.A1_at

Description gb:AK059658.1
DB_XREF= gi:32969676
TID=Os.20194.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D06, full insert sequence.
FL= gb:AK059658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2426011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24250Os.7411.1.S1_at11/119+14393505..14398400ubiquitin specific protease 39, putative, expressed
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24270NANA9+14418039..14420842retrotransposon protein, putative, unclassified
LOC_Os09g24280OsAffx.29996.1.S1_at10/119+14423811..14425809hypothetical protein
LOC_Os09g24290OsAffx.30543.2.S1_x_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24290OsAffx.30543.2.S1_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24300NANA9+14440360..14440806hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20194.1.A1_at--277--3611Chr09:14415407..14415431 (25 bp)
CATTGTTGTAGCTGTCGTAGTATTG
LOC_Os09g24260
Os.20194.1.A1_at--1083--8751Chr09:14415413..14415437 (25 bp)
TGTAGCTGTCGTAGTATTGTTGGAG
LOC_Os09g24260
Os.20194.1.A1_at--909--31Chr09:14415428..14415452 (25 bp)
ATTGTTGGAGATATAGTACGTCTTG
LOC_Os09g24260
Os.20194.1.A1_at--1016--10111Chr09:14415439..14415463 (25 bp)
TATAGTACGTCTTGGGATTTGGATG
LOC_Os09g24260
Os.20194.1.A1_at--887--7911Chr09:14415453..14415477 (25 bp)
GGATTTGGATGAGTTGTAACCACCC
LOC_Os09g24260
Os.20194.1.A1_at--953--7391Chr09:14415486..14415510 (25 bp)
GTGATGTGATTTATACGGACGGTTT
LOC_Os09g24260
Os.20194.1.A1_at--151--10411Chr09:14415496..14415520 (25 bp)
TTATACGGACGGTTTTTAGCATTGT
LOC_Os09g24260
Os.20194.1.A1_at--341--10351Chr09:14415510..14415534 (25 bp)
TTTAGCATTGTAATTAGGTTCGGCA
LOC_Os09g24260
Os.20194.1.A1_at--199--1011Chr09:14415525..14415549 (25 bp)
AGGTTCGGCATTTATACATTTCCCA
LOC_Os09g24260
Os.20194.1.A1_at--189--6711Chr09:14415527..14415551 (25 bp)
GTTCGGCATTTATACATTTCCCATT
LOC_Os09g24260
Os.20194.1.A1_at--33--3951Chr09:14415530..14415554 (25 bp)
CGGCATTTATACATTTCCCATTTAC
LOC_Os09g24260
Target Sequence 
CATTGTTGTAGCTGTCGTAGTATTGTTGGAGATATAGTACGTCTTGGGATTTGGATGAGTTGTAACCACCCNTTTTGATC
GTGATGTGATTTATACGGACGGTTTTTAGCATTGTAATTAGGTTCGGCATTTATACATTTCCCATTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20194.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis