Browse Element(s) Details


Os.54262.1.S1_at

Description gb:AK105259.1
DB_XREF= gi:32990468
TID=Os.54262.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H02, full insert sequence.
FL= gb:AK105259.1 gb:AK102898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2424011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24250Os.7411.1.S1_at11/119+14393505..14398400ubiquitin specific protease 39, putative, expressed
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006381biological_processmRNA editing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54262.1.S1_at--831--6511Chr09:14389914..14389938 (25 bp)
GATATTCTTGCTAGCTAACTGCATG
LOC_Os09g24240
Os.54262.1.S1_at--606--6851Chr09:14389885..14389909 (25 bp)
GTTTGCTTGGACCATGGCTATATCA
LOC_Os09g24240
Os.54262.1.S1_at--632--391Chr09:14389864..14389888 (25 bp)
ATCACCTCTGATTGTCTGTAGCCGG
LOC_Os09g24240
Os.54262.1.S1_at--520--2091Chr09:14389730..14389754 (25 bp)
ACATCAGAGCCGTGGTGTTACATCA
LOC_Os09g24240
Os.54262.1.S1_at--341--3011Chr09:14389656..14389680 (25 bp)
AATGACGCTGTCTGTTGCGATCTGC
LOC_Os09g24240
Os.54262.1.S1_at--503--5711Chr09:14389613..14389637 (25 bp)
GACTCAATTGGTCACGACGCACGAC
LOC_Os09g24240
Os.54262.1.S1_at--219--6131Chr09:14389548..14389572 (25 bp)
GAGTGGAATTCTGACGTCGACCTGG
LOC_Os09g24240
Os.54262.1.S1_at--9--7231Chr09:14389533..14389557 (25 bp)
GTCGACCTGGAATTTGGATCTGATT
LOC_Os09g24240
Os.54262.1.S1_at--110--3531Chr09:14389469..14389493 (25 bp)
CATGCAGCTCTTGTGTTTATTCGAA
LOC_Os09g24240
Os.54262.1.S1_at--288--10631Chr09:14389450..14389474 (25 bp)
TTCGAATACCATTTGCTTGGGCAAC
LOC_Os09g24240
Os.54262.1.S1_at--674--10611Chr09:14389340..14389364 (25 bp)
TTCGATATCTCTGATGTCTCACCTA
LOC_Os09g24240
Target Sequence 
GATATTCTTGCTAGCTAACTGCATGAGAAGTTTGCTTGGACCATGGCTATATCACCTCTGATTGTCTGTAGCCGGGAGGT
GAAACAAGCATCAAAAGTCAAAGAAGGTGCTCCAGGTAATGGAGGATCAAAGAATGCACAAGTATTATTGTTACAATAAT
GGATCATTTGGCAATCGCAATATTACATCAGAGCCGTGGTGTTACATCACAAAGTACAATGCTGTCGTCAAGGTAGAAAA
GAGAACTGGCTGGTGTCCAATGACGCTGTCTGTTGCGATCTGCAAGAGGTATTTGGTCTTTGACTCAATTGGTCACGACG
CACGACAGAGGAAGCGCTAATTTAATTTGCTTCTGTGAGACAGTGAGAGTGGAATTCTGACGTCGACCTGGAATTTGGAT
CTGATTAGAAACAACAGGACNAGTGCGAAAGCATATTCCAAGGGACATGCAGCTCTTGTGTTTATTCGAATACCATTTGC
TTGGGCAACATTTGGGCACATAATACACACACCATATTTTTCTCCCTNGAAAATGTGAGACGCAAATTACTTGTATGCCT
ATGAAACTTTTTTATTCGATATCTCTGATGTCTCACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis