Browse Element(s) Details


OsAffx.6382.1.S1_at

Description tigr:9637.m02072
TID=OsAffx.6382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dna mismatch repair protein msh6-1 (atmsh6-1). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2422011/11DNA mismatch repair protein MSH6-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24170OsAffx.29995.1.S1_at10/119+14351511..14354261hypothetical protein
LOC_Os09g24180OsAffx.17867.1.S1_at10/119+14355710..14356206hypothetical protein
LOC_Os09g24190OsAffx.17868.1.S1_at11/119+14358192..14358479hypothetical protein
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24250Os.7411.1.S1_at11/119+14393505..14398400ubiquitin specific protease 39, putative, expressed
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6382.1.S1_at--881--6991Chr09:14384835..14384859 (25 bp)
GTACGTTCTTAGTGGAGCTCATGGA
LOC_Os09g24220
OsAffx.6382.1.S1_at--1151--8151Chr09:14384857..14384966 (25 bp)
GGAAACTGCTTCTGTGCTTTCATCA
LOC_Os09g24220
OsAffx.6382.1.S1_at--427--10431Chr09:14384991..14385015 (25 bp)
TTAGATGAGCTTGGGCGCGGTACAT
LOC_Os09g24220
OsAffx.6382.1.S1_at--646--4871Chr09:14385033..14385176 (25 bp)
GCTATTGCGGCATCTGTTCTAGAAT
LOC_Os09g24220
OsAffx.6382.1.S1_at--1099--3551Chr09:14385185..14385209 (25 bp)
CATCATGTGCAGTGCCTAGGCTTAT
LOC_Os09g24220
OsAffx.6382.1.S1_at--556--3211Chr09:14385333..14385355 (23 bp)
CAAGGTATCACTCTGCCATATGGCA
LOC_Os09g24220
OsAffx.6382.1.S1_at--1001--10271Chr09:14385397..14385421 (25 bp)
TTTCCTCTACAAGTTAACGCCTGGT
LOC_Os09g24220
OsAffx.6382.1.S1_at--321--7891Chr09:14385419..14385443 (25 bp)
GGTTCATGCCCCAAAAGCTATGGTG
LOC_Os09g24220
OsAffx.6382.1.S1_at--355--1171Chr09:14385607..14385631 (25 bp)
AGTCAAGTGACTTCGAGGCCAGTTA
LOC_Os09g24220
OsAffx.6382.1.S1_at--298--6171Chr09:14385678..14385702 (25 bp)
GAGGATAAATTTGCCGCCATCAAGG
LOC_Os09g24220
OsAffx.6382.1.S1_at--821--471Chr09:14385703..14385727 (25 bp)
ATCTGTTCCGCGTCGTGAAGGCAAT
LOC_Os09g24220
Target Sequence 
GTACGTTCTTAGTGGAGCTCATGGAAACTGCTTCTGTGCTTTCATCAGCAACCAAGAATTCTCTTGTGGCTTTAGATGAG
CTTGGGCGCGGTACATCAACCTCTGATGGACAAGCTATTGCGGCATCTGTTCTAGAATATCTAGTTCATCATGTGCAGTG
CCTAGGCTTATTTTCAACACACTACCATAGGTTAGCAGCAGAAAATAAGGATAGCAAGGTATCACTCTGCCATATGGCAT
GTGAGATAAGCAAGGGAGAAGGAGGTTTGGAAGAAGTTACTTTCCTCTACAAGTTAACGCCTGGTTCATGCCCCAAAAGC
TATGGTGTAAATGTTGCTCGATTGGCAGGAATACCTGCATCAGTGCTTCAAAGGGCTAATGAGAAGTCAAGTGACTTCGA
GGCCAGTTACGGGAAGCGACCCGGTATAACAAAGAATAAGCCCAGCTGTGCACAGGAGGATAAATTTGCCGCCATCAAGG
ATCTGTTCCGCGTCGTGAAGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis