Browse Element(s) Details


OsAffx.17867.1.S1_at

Description tigr:9637.m02067
TID=OsAffx.17867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2418010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24130Os.17958.1.S1_at1/119+14331183..14331587hypothetical protein
LOC_Os09g24130OsAffx.17938.1.S1_at1/119+14331183..14331587hypothetical protein
LOC_Os09g24140Os.17958.1.S1_at4/119+14336016..14336688expressed protein
LOC_Os09g24140OsAffx.17938.1.S1_at1/119+14336016..14336688expressed protein
LOC_Os09g24150Os.17958.1.S1_at11/119+14340178..14341852retrotransposon protein, putative, unclassified
LOC_Os09g24159Os.17958.1.S1_at1/119+14343453..14343857hypothetical protein
LOC_Os09g24170OsAffx.29995.1.S1_at10/119+14351511..14354261hypothetical protein
LOC_Os09g24180OsAffx.17867.1.S1_at10/119+14355710..14356206hypothetical protein
LOC_Os09g24190OsAffx.17868.1.S1_at11/119+14358192..14358479hypothetical protein
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17867.1.S1_at--274--4391Chr09:14356185..14356209 (25 bp)
CCAATGAGGTATTTGGGCTTTCCAA
NONE
OsAffx.17867.1.S1_at--717--8131Chr09:14356082..14356106 (25 bp)
GGAAATCTTCAGTCAATTGGAGGGA
LOC_Os09g24180
OsAffx.17867.1.S1_at--13--9751Chr09:14356044..14356068 (25 bp)
TAATGCTTGTCTTAGTAATACTCCT
LOC_Os09g24180
OsAffx.17867.1.S1_at--859--9871Chr09:14356026..14356050 (25 bp)
TACTCCTTTGTACATGTTATCCTTC
LOC_Os09g24180
OsAffx.17867.1.S1_at--532--6791Chr09:14356011..14356035 (25 bp)
GTTATCCTTCTTTAGGGTGCCTATT
LOC_Os09g24180
OsAffx.17867.1.S1_at--79--8031Chr09:14355960..14355984 (25 bp)
GGAGGTTCTTATGGCAGGATGATCA
LOC_Os09g24180
OsAffx.17867.1.S1_at--925--11Chr09:14355909..14355933 (25 bp)
ATTGGAATACGGTTTGTTCTCCCAG
LOC_Os09g24180
OsAffx.17867.1.S1_at--1096--10531Chr09:14355893..14355917 (25 bp)
TTCTCCCAGGGAGACAGGGCGTTTG
LOC_Os09g24180
OsAffx.17867.1.S1_at--517--8211Chr09:14355876..14355900 (25 bp)
GGCGTTTGGGCATTTTGGACTTAGA
LOC_Os09g24180
OsAffx.17867.1.S1_at--165--2271Chr09:14355852..14355876 (25 bp)
AAATCATGAACATTGCTTTGCTGGG
LOC_Os09g24180
OsAffx.17867.1.S1_at--929--7591Chr09:14355829..14355853 (25 bp)
GGGAAATGGCTCTGGAACCTTGAAA
LOC_Os09g24180
Target Sequence 
CCAATGAGGTATTTGGGCTTTCCAATTGATAAAGAAATACTTCTGAACAAAGATTGGAAGAAGCCTGAGGAAACAATTGA
AAAAAAAAGTTGGTTGCTGGCAAGGAAATCTTCAGTCAATTGGAGGGAGGGTGAGTTTAATTAATGCTTGTCTTAGTAAT
ACTCCTTTGTACATGTTATCCTTCTTTAGGGTGCCTATTGGGGTTAGAGAGAACGGATCTTTATAGGAGGTTCTTATGGC
AGGATGATCAGGGTATTAGGAAGTATCATTTGGTTAATTGGAATACGGTTTGTTCTCCCAGGGAGACAGGGCGTTTGGGC
ATTTTGGACTTAGAAATCATGAACATTGCTTTGCTGGGGAAATGGCTCTGGAACCTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis