Browse Element(s) Details


Os.7085.1.S1_a_at

Description gb:U63530.1
DB_XREF= gi:1488296
TID=Os.7085.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7085 (NCBI UniGene Cluster)
DEF=Oryza sativa osRAD23 mRNA, complete cds.
PROD=osRAD23
FL= gb:U63530.1 gb:AK066105.1 gb:AK103130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2420011/11DNA repair protein RAD23, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24150Os.17958.1.S1_at11/119+14340178..14341852retrotransposon protein, putative, unclassified
LOC_Os09g24159Os.17958.1.S1_at1/119+14343453..14343857hypothetical protein
LOC_Os09g24170OsAffx.29995.1.S1_at10/119+14351511..14354261hypothetical protein
LOC_Os09g24180OsAffx.17867.1.S1_at10/119+14355710..14356206hypothetical protein
LOC_Os09g24190OsAffx.17868.1.S1_at11/119+14358192..14358479hypothetical protein
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
GO:0006289biological_processnucleotide-excision repair
GO:0006512biological_processubiquitin cycle
GO:0003684molecular_functiondamaged DNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7085.1.S1_a_at--121--5531Chr09:14365211..14365235 (25 bp)
GAAAACCAAGCTGAGTTCCTCCACT
LOC_Os09g24200
Os.7085.1.S1_a_at--85--2691Chr09:14365218..14365242 (25 bp)
AAGCTGAGTTCCTCCACTTAATCAA
LOC_Os09g24200
Os.7085.1.S1_a_at--1092--8891Chr09:14365222..14365246 (25 bp)
TGAGTTCCTCCACTTAATCAATGAA
LOC_Os09g24200
Os.7085.1.S1_a_at--630--2051Chr09:14365233..14365257 (25 bp)
ACTTAATCAATGAACCAGCTGAGGG
LOC_Os09g24200
Os.7085.1.S1_a_at--1073--3191Chr09:14365240..14365264 (25 bp)
CAATGAACCAGCTGAGGGTGATGAT
LOC_Os09g24200
Os.7085.1.S1_a_at--797--5951Chr09:14365353..14365375 (23 bp)
GAGAATTTGCTAGACCAGTTTCCAG
LOC_Os09g24200
Os.7085.1.S1_a_at--734--10271Chr09:14365356..14365380 (25 bp)
TTTGCTAGACCAGTTTCCAGAGGCA
LOC_Os09g24200
Os.7085.1.S1_a_at--287--1331Chr09:14365374..14365398 (25 bp)
AGAGGCAATGCCACAGACCATAGCA
LOC_Os09g24200
Os.7085.1.S1_a_at--1085--8211Chr09:14365377..14365401 (25 bp)
GGCAATGCCACAGACCATAGCAGTT
LOC_Os09g24200
Os.7085.1.S1_a_at--226--3311Chr09:14365385..14365409 (25 bp)
CACAGACCATAGCAGTTACTCCAGA
LOC_Os09g24200
Os.7085.1.S1_a_at--124--3431Chr09:14365387..14365411 (25 bp)
CAGACCATAGCAGTTACTCCAGAGG
LOC_Os09g24200
Target Sequence 
GAAAACCAAGCTGAGTTCCTCCACTTAATCAATGAACCAGCTGAGGGTGATGATGAAGAGAATTTGCTAGACCAGTTTCC
AGAGGCAATGCCACAGACCATAGCAGTTACTCCAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7085.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis