Browse Element(s) Details


OsAffx.29995.1.S1_at

Description tigr:9637.m02066
TID=OsAffx.29995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2417010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24110Os.17958.1.S1_at1/119+14326874..14327613expressed protein
LOC_Os09g24120Os.17958.1.S1_at2/119+14328890..14329627expressed protein
LOC_Os09g24130Os.17958.1.S1_at1/119+14331183..14331587hypothetical protein
LOC_Os09g24130OsAffx.17938.1.S1_at1/119+14331183..14331587hypothetical protein
LOC_Os09g24140Os.17958.1.S1_at4/119+14336016..14336688expressed protein
LOC_Os09g24140OsAffx.17938.1.S1_at1/119+14336016..14336688expressed protein
LOC_Os09g24150Os.17958.1.S1_at11/119+14340178..14341852retrotransposon protein, putative, unclassified
LOC_Os09g24159Os.17958.1.S1_at1/119+14343453..14343857hypothetical protein
LOC_Os09g24170OsAffx.29995.1.S1_at10/119+14351511..14354261hypothetical protein
LOC_Os09g24180OsAffx.17867.1.S1_at10/119+14355710..14356206hypothetical protein
LOC_Os09g24190OsAffx.17868.1.S1_at11/119+14358192..14358479hypothetical protein
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29995.1.S1_at--1144--5151Chr09:14354052..14354076 (25 bp)
GCAAGCCGGAGAGCAACAGGCGATT
LOC_Os09g24170
OsAffx.29995.1.S1_at--156--2131Chr09:14354037..14354061 (25 bp)
ACAGGCGATTGTGGTGGCGCTTATC
LOC_Os09g24170
OsAffx.29995.1.S1_at--211--311Chr09:14353999..14354023 (25 bp)
ATAGCCCTCGCTCGTTGCACGAGTT
LOC_Os09g24170
OsAffx.29995.1.S1_at--759--10671Chr09:14353975..14354000 (24 bp)
TTCCTCTCGCAGATGCGGCACGGCG
LOC_Os09g24170
OsAffx.29995.1.S1_at--782--111Chr09:14353206..14353230 (25 bp)
ATTCTCAGGTTGCTTGTTTCTTCAC
LOC_Os09g24170
OsAffx.29995.1.S1_at--1068--10311Chr09:14352790..14353214 (25 bp)
TTTCTTCACCGATTCTCAGCTTTTA
LOC_Os09g24170
OsAffx.29995.1.S1_at--1020--1771NONE
ACCGATTCTCAGCTTTTATCCAATA
NONE
OsAffx.29995.1.S1_at--681--851Chr09:14352433..14352457 (25 bp)
ATGGCATGAACCAACTAATACTGGG
LOC_Os09g24170
OsAffx.29995.1.S1_at--107--2011Chr09:14352422..14352444 (23 bp)
ACTAATACTGGGAATCAAGCTGGAT
LOC_Os09g24170
OsAffx.29995.1.S1_at--1026--8971Chr09:14352109..14352133 (25 bp)
TGAACTTCTCTTTGCGGATTCAGAA
LOC_Os09g24170
OsAffx.29995.1.S1_at--884--10231Chr09:14351545..14351569 (25 bp)
TATTGGCTCAGTACGGGATTGCTTG
LOC_Os09g24170
Target Sequence 
GCAAGCCGGAGAGCAACAGGCGATTGTGGTGGCGCTTATCCCACGCTTGTCCCATAGCCCTCGCTCGTTGCACGAGTTCC
TCTCGCAGATGCGGCACGGCGAGGCGGAGGGTGCGCGACCGCTCGCCGCTAGGGTTTGGGGCAAGTTGGGCGATAGGGAT
GAGGAGGAAGGAGGAAGGGATGAGGGAGTGATTCTCAGGTTGCTTGTTTCTTCACCGATTCTCAGCTTTTATCCAATATG
CAATGGCATGAACCAACTAATACTGGGAATCAAGCTGGATGATGGATCTGTTGGTTCTGAACTTCTCTTTGCGGATTCAG
AACAATGGAAGTCCATAAAAAGGAAGAAGGGACAACAAACATGTGTACAAAAAGATAATAAAGTATTGGCTCAGTACGGG
ATTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis