Browse Element(s) Details


Os.57568.1.S1_at

Description gb:AK069164.1
DB_XREF= gi:32979188
TID=Os.57568.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006A15, full insert sequence.
FL= gb:AK103905.1 gb:AK069164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2421011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24159Os.17958.1.S1_at1/119+14343453..14343857hypothetical protein
LOC_Os09g24170OsAffx.29995.1.S1_at10/119+14351511..14354261hypothetical protein
LOC_Os09g24180OsAffx.17867.1.S1_at10/119+14355710..14356206hypothetical protein
LOC_Os09g24190OsAffx.17868.1.S1_at11/119+14358192..14358479hypothetical protein
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24250Os.7411.1.S1_at11/119+14393505..14398400ubiquitin specific protease 39, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57568.1.S1_at--264--371Chr09:14367623..14367647 (25 bp)
ATCAAGTCCCAACCTTCTGAAGATG
LOC_Os09g24210
Os.57568.1.S1_at--292--8551Chr09:14367565..14367589 (25 bp)
TGGAGATTGTTGTTAGCACCCCTTC
LOC_Os09g24210
Os.57568.1.S1_at--550--331Chr09:14367489..14367513 (25 bp)
ATACTTGGCGATCGTTCCTTTCGAC
LOC_Os09g24210
Os.57568.1.S1_at--710--271Chr09:14367454..14367478 (25 bp)
ATATGGTTCCACTTCAGTCAGCAGA
LOC_Os09g24210
Os.57568.1.S1_at--931--571Chr09:14367430..14367454 (25 bp)
ATCCACCCGGTTTAACTGATGATCC
LOC_Os09g24210
Os.57568.1.S1_at--431--6291Chr09:14367413..14367437 (25 bp)
GATGATCCAACCATTACTTCTGGCA
LOC_Os09g24210
Os.57568.1.S1_at--631--2491Chr09:14367333..14367357 (25 bp)
AACAGGCAATGCTTTCGATGGATGA
LOC_Os09g24210
Os.57568.1.S1_at--149--6791Chr09:14367277..14367301 (25 bp)
GTTAGGCTCGCATCATTTTGGAAAT
LOC_Os09g24210
Os.57568.1.S1_at--1082--10731Chr09:14367186..14367210 (25 bp)
TTGCAACTCATGTTCGAACCACAGT
LOC_Os09g24210
Os.57568.1.S1_at--1111--9831Chr09:14367157..14367181 (25 bp)
TAAATTCTTATAGTCCCAGCAGGAT
LOC_Os09g24210
Os.57568.1.S1_at--699--10151Chr09:14367114..14367138 (25 bp)
TATCTTGGGCACAAACCTCTGAATT
LOC_Os09g24210
Target Sequence 
ATCAAGTCCCAACCTTCTGAAGATGACTCGTCTCAAGCAAAAGCTGCAGCTCCATGCTTGGAGATTGTTGTTAGCACCCC
TTCTGAGCAGGTGGTAAATCAATCCCCCGGATGCCAGTCCCAGTCACCANCTCCATACTTGGCGATCGTTCCTTTCGACG
CTGCTCATGATATGGTTCCACTTCAGTCAGCAGATCCACCCGGTTTAACTGATGATCCAACCATTACTTCTGGCATAATT
GATATTTCAGATGATGACTGATTTTATTTTCGAATTGGCATTGATCCTGCAACAGGCAATGCTTTCGATGGATGAACAAC
ATACTGGATGCTAACAAACTATTGGTGTTAGGCTCGCATCATTTTGGAAATTGACATTGTTTTTGCATAGTGCCTAATAT
AGAACAGTAGCTGCTTATGAGCATAGGATTGCAAATTTTGCAACTCATGTTCGAACCACAGTAGCATAAATTCTTATAGT
CCCAGCAGGATNTCAGAAGTAGACTCTTATATCTTGGGCACAAACCTCTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis