Browse Element(s) Details


Os.7411.1.S1_at

Description gb:AK070971.1
DB_XREF= gi:32980994
TID=Os.7411.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074K10, full insert sequence.
FL= gb:AK070971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2425011/11ubiquitin specific protease 39, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24250Os.7411.1.S1_at11/119+14393505..14398400ubiquitin specific protease 39, putative, expressed
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24270NANA9+14418039..14420842retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7411.1.S1_at--288--751Chr09:14394064..14394088 (25 bp)
ATGTAGCACCTTGCATACCGACCTT
LOC_Os09g24250
Os.7411.1.S1_at--256--3571Chr09:14394051..14394075 (25 bp)
CATACCGACCTTTCTTTTGTTGCTT
LOC_Os09g24250
Os.7411.1.S1_at--823--6671Chr09:14394033..14394057 (25 bp)
GTTGCTTCTCTCAGATTTTATCATT
LOC_Os09g24250
Os.7411.1.S1_at--91--3751Chr09:14394003..14394027 (25 bp)
CTAATCGTCATGTCTGGAGCTTTTT
LOC_Os09g24250
Os.7411.1.S1_at--683--10671Chr09:14393958..14393982 (25 bp)
TTCCTTTACCCTTGTTCCATACAGT
LOC_Os09g24250
Os.7411.1.S1_at--978--6771Chr09:14393894..14393918 (25 bp)
GTTAGATTATCACACCGGAGGGACT
LOC_Os09g24250
Os.7411.1.S1_at--825--1071Chr09:14393876..14393900 (25 bp)
AGGGACTATAGGAGCTAGCAGCAGT
LOC_Os09g24250
Os.7411.1.S1_at--87--1371Chr09:14393819..14393843 (25 bp)
AGAGCTTTGATTGACCGGTTGTTTA
LOC_Os09g24250
Os.7411.1.S1_at--896--9831Chr09:14393796..14393820 (25 bp)
TAAAGCAGAAGACACTTCGGTTTCC
LOC_Os09g24250
Os.7411.1.S1_at--1009--3191Chr09:14393714..14393738 (25 bp)
CAATGGGAGGCCTGTTCTGTGCGAC
LOC_Os09g24250
Os.7411.1.S1_at--114--5471Chr09:14393650..14393674 (25 bp)
GAACTGGTTTCTTTGACAGCAATGG
LOC_Os09g24250
Target Sequence 
ATGTAGCACCTTGCATACCGACCTTTCTTTTGTTGCTTCTCTCAGATTTTATCATTAGAAGCTAATCGTCATGTCTGGAG
CTTTTTTTTTTAGAGAACTATGGTTGTTCCTTTACCCTTGTTCCATACAGTTAATTGAAAAGCACAGGGTGAGAATGCTG
TGTTAGAACTGTTAGATTATCACACCGGAGGGACTATAGGAGCTAGCAGCAGTAAAATATAAAATTCATGGGNNCATTTT
ATTTCCCNAGAGCTTTGATTGACCGGTTGTTTAAAGCAGAAGACACTTCGGTTTCCNAAGTATTTTCCCTTATTTATCCN
ATGGAAGGGTGAAAATGTACAAGGGGTGTTCCGTGCAATGGGAGGCCTGTTCTGTGCGACGAGTGGAGGGAGAATTGCTT
TAAGTGGTACTGTAGAAAAGAACTGGTTTCTTTGACAGCAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis