Browse Element(s) Details


OsAffx.17869.1.S1_at

Description tigr:9637.m02073
TID=OsAffx.17869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HAD-superfamily hydrolase, subfamily IA, variant 3, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2423011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24250Os.7411.1.S1_at11/119+14393505..14398400ubiquitin specific protease 39, putative, expressed
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17869.1.S1_at--1136--6431Chr09:14387203..14387227 (25 bp)
GATCATGGATACAAGCGTGCGGCTG
LOC_Os09g24230
OsAffx.17869.1.S1_at--598--2211Chr09:14387193..14387217 (25 bp)
ACAAGCGTGCGGCTGTAACCAATGC
LOC_Os09g24230
OsAffx.17869.1.S1_at--495--4131Chr09:14387167..14387191 (25 bp)
CCCAGGATTAATTCCGAGCTCATGA
LOC_Os09g24230
OsAffx.17869.1.S1_at--133--9751Chr09:14387159..14387183 (25 bp)
TAATTCCGAGCTCATGATCTCCCTT
LOC_Os09g24230
OsAffx.17869.1.S1_at--663--10551Chr09:14387136..14387160 (25 bp)
TTCTTGGCCTCACAGATTTCTTCCA
LOC_Os09g24230
OsAffx.17869.1.S1_at--1133--9691Chr09:14387127..14387151 (25 bp)
TCACAGATTTCTTCCAGGCCGTCAT
LOC_Os09g24230
OsAffx.17869.1.S1_at--219--3491Chr09:14387113..14387137 (25 bp)
CAGGCCGTCATCGTTGGAGGCGAAT
LOC_Os09g24230
OsAffx.17869.1.S1_at--149--5291Chr09:14387092..14387116 (25 bp)
GAATGTGAGAAGCCGAAACCCGCCC
LOC_Os09g24230
OsAffx.17869.1.S1_at--726--10631Chr09:14387065..14387089 (25 bp)
TTCCCCTACCTGAAGGCTCTCAAGG
LOC_Os09g24230
OsAffx.17869.1.S1_at--669--971Chr09:14387043..14387067 (25 bp)
AGGAGCTTCAGGTGTCTGCGGACCA
LOC_Os09g24230
OsAffx.17869.1.S1_at--468--9131Chr09:14387027..14387051 (25 bp)
TGCGGACCACACCTTCATCTTTGAG
LOC_Os09g24230
Target Sequence 
GATCATGGATACAAGCGTGCGGCTGTAACCAATGCCCCCAGGATTAATTCCGAGCTCATGATCTCCCTTCTTGGCCTCAC
AGATTTCTTCCAGGCCGTCATCGTTGGAGGCGAATGTGAGAAGCCGAAACCCGCCCCATTCCCCTACCTGAAGGCTCTCA
AGGAGCTTCAGGTGTCTGCGGACCACACCTTCATCTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis