Browse Element(s) Details


OsAffx.17870.1.S1_x_at

Description tigr:9637.m02076
TID=OsAffx.17870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2426011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24250Os.7411.1.S1_at11/119+14393505..14398400ubiquitin specific protease 39, putative, expressed
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24270NANA9+14418039..14420842retrotransposon protein, putative, unclassified
LOC_Os09g24280OsAffx.29996.1.S1_at10/119+14423811..14425809hypothetical protein
LOC_Os09g24290OsAffx.30543.2.S1_x_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24290OsAffx.30543.2.S1_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24300NANA9+14440360..14440806hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17870.1.S1_x_at--1020--6311Chr09:14414403..14414427 (25 bp)
GATGAAGCATTCTTGGCCCTTGCAA
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--1075--2351Chr09:14414454..14414478 (25 bp)
AAAGCGCAGGCCACTATTTGTGCAC
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--245--4891Chr09:14414496..14414876 (25 bp)
GCTTTGCTACAGGAAATTGCTCGCC
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--742--31Chr09:14414867..14414891 (25 bp)
ATTGCTCGCCTACAAAGGGTTCAAG
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--546--3211Chr09:14414888..14414912 (25 bp)
CAAGGAGCTGGTGCGCTCAGTGCAA
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--684--951Chr09:14414916..14414940 (25 bp)
AGGAAATGGCCAGGCTATCTCGCCA
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--455--6151Chr09:14415011..14415035 (25 bp)
GAGGTCCAGAACTTTGCCTATGCCA
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--335--2291Chr09:14415039..14415063 (25 bp)
AAATGCTCGATCTCCTATATTCCAA
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--156--751Chr09:14415210..14415234 (25 bp)
ATGTTTGCGATCTCTGTGGTGCCAA
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--1004--5071Chr09:14415251..14415275 (25 bp)
GCACCAGGGTGTGTCATCTGTGGTA
LOC_Os09g24260
OsAffx.17870.1.S1_x_at--356--5931Chr09:14415280..14415304 (25 bp)
GAGCATCAAGAGATCTGACGCACTT
LOC_Os09g24260
Target Sequence 
GATGAAGCATTCTTGGCCCTTGCAAAGGACCAGTCACGTGAAGCTGATATCAAAGCGCAGGCCACTATTTGTGCACAGTA
TAAGATAGCTGTTGCTTTGCTACAGGAAATTGCTCGCCTACAAAGGGTTCAAGGAGCTGGTGCGCTCAGTGCAAAGGAGG
AAATGGCCAGGCTATCTCGCCACCTTGCTTCCCTACCTATCCAAGCTAAGCACCGGATTAACTGCATCAGAACTGCCATC
AAGCGAAACATGGAGGTCCAGAACTTTGCCTATGCCAAGCAAATGCTCGATCTCCTATATTCCAAGGCGCCCCCATCGAA
GCAGGATGAGCTCAAGAGTCTGATCGACATGTGTGTCCAGAGGGGGCTGACAAACAAATCTATCGACCCATTCGAAGACC
CCTCTCAGTTCTGCGCCGTCACCCTCAGCCGCCTCTCAACCATCGGTCATGATGTTTGCGATCTCTGTGGTGCCAAATTC
TCCGCTCTTTCTGCACCAGGGTGTGTCATCTGTGGTATGGGGAGCATCAAGAGATCTGACGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17870.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis