Browse Element(s) Details


OsAffx.30004.1.S1_x_at

Description tigr:9637.m02609
TID=OsAffx.30004.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glutamatemalate translocator
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2943011/11anion transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29404OsAffx.23081.1.S1_at11/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S1_at10/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S2_at8/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29420Os.32882.1.A1_a_at11/119+17873475..17879180queuine tRNA-ribosyltransferase, putative, expressed
LOC_Os09g29430OsAffx.30004.1.S1_x_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29430Os.5974.1.A1_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29440OsAffx.17960.1.S1_at10/119+17891994..17893843hypothetical protein
LOC_Os09g29449NANA9+17897929..17898352NA
LOC_Os09g29460Os.2364.1.S1_at11/119+17902178..17903900Homeobox associated leucine zipper family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0015743biological_processmalate transport
GO:0015367molecular_functionoxoglutarate:malate antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30004.1.S1_x_at--1129--7731Chr09:17883609..17883633 (25 bp)
GGTGTATCTAGTGTTGTTGCCGCGA
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--882--6331Chr09:17883632..17883656 (25 bp)
GATGCTTGGACTCTCTATTCTTCTC
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--911--10211Chr09:17883647..17883671 (25 bp)
TATTCTTCTCTTGCTAGGTGTGCTA
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--817--951Chr09:17883746..17883770 (25 bp)
AGGACAGCTCACTAACCTGGGAATT
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--661--2691Chr09:17883798..17883822 (25 bp)
AAGCTGCTTGAATCCTTCTCGCTGA
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--819--4471Chr09:17883827..17883851 (25 bp)
GCCTGCAGCCTTTTGTGTTCTTGAG
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--886--311Chr09:17883911..17883935 (25 bp)
ATACTCGGCATTTCTGGCCATGCAT
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--689--751Chr09:17883934..17883958 (25 bp)
ATGTAGCAGCTGGTGTTCCTCGAGT
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--877--8731Chr09:17883961..17883985 (25 bp)
TGTCAGCTCTTGCTTTGGCATTCAA
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--168--10011Chr09:17884019..17884043 (25 bp)
TAGCGGACAGGCTGCAGTGTACTTT
LOC_Os09g29430
OsAffx.30004.1.S1_x_at--146--7691Chr09:17884325..17884349 (25 bp)
GGGTTTCGTAACAGCCTTGATCAAT
LOC_Os09g29430
Target Sequence 
GGTGTATCTAGTGTTGTTGCCGCGATGCTTGGACTCTCTATTCTTCTCTTGCTAGGTGTGCTAGACTGGGATGATTGCTT
AAATGAGAAATCTGCATGGGATACATTGGCATGGTTTGCAGTTCTAGTTGGAATGGCAGGACAGCTCACTAACCTGGGAA
TTGTGTCATGGATGTCAAGCTGTGTTGCCAAGCTGCTTGAATCCTTCTCGCTGAGCTGGCCTGCAGCCTTTTGTGTTCTT
GAGGCTTCCTACTTCCTGATTCACTATCTATTTGCAAGCCAAACCGGACATGTTGGAGCTTTATACTCGGCATTTCTGGC
CATGCATGTAGCAGCTGGTGTTCCTCGAGTGCTGTCAGCTCTTGCTTTGGCATTCAACACAAATCTGTTTGGTGCACTAA
CTCATTATAGTAGCGGACAGGCTGCAGTGTACTTTGGAGCGGGGTATCTTGAGCTTCCAGATGTATTCAGGATGGGTTTC
GTAACAGCCTTGATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30004.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis