Browse Element(s) Details


OsAffx.30029.1.S1_at

Description tigr:9637.m02257
TID=OsAffx.30029.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2597011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein
LOC_Os09g25940OsAffx.17900.1.S1_at11/119+15575817..15579333Receptor family ligand binding region containing protein
LOC_Os09g25950Os.53948.1.S1_at11/119+15582193..15585474expressed protein
LOC_Os09g25960OsAffx.30030.1.S1_x_at11/119+15587269..15593377Receptor family ligand binding region containing protein
LOC_Os09g25970OsAffx.30029.1.S1_at11/119+15596968..15597719hypothetical protein
LOC_Os09g25980OsAffx.6401.1.S1_at9/119+15598148..15605591Receptor family ligand binding region containing protein, expressed
LOC_Os09g25990OsAffx.30030.1.S1_x_at11/119+15609714..15615400Receptor family ligand binding region containing protein, expressed
LOC_Os09g26000OsAffx.30030.2.S1_at10/119+15619334..15624677Receptor family ligand binding region containing protein
LOC_Os09g26000OsAffx.30030.1.S1_x_at2/119+15619334..15624677Receptor family ligand binding region containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30029.1.S1_at--418--8411Chr09:15597026..15597050 (25 bp)
GGCCGAGAGGCCTTCCCGGCGTATC
LOC_Os09g25970
OsAffx.30029.1.S1_at--68--8111Chr09:15597078..15597102 (25 bp)
GGACGCCGGAGAGGATATGCCTCCA
LOC_Os09g25970
OsAffx.30029.1.S1_at--401--1331Chr09:15597087..15597111 (25 bp)
AGAGGATATGCCTCCAGTTGCCGAG
LOC_Os09g25970
OsAffx.30029.1.S1_at--65--271Chr09:15597092..15597116 (25 bp)
ATATGCCTCCAGTTGCCGAGGAGCC
LOC_Os09g25970
OsAffx.30029.1.S1_at--231--971Chr09:15597110..15597134 (25 bp)
AGGAGCCCACGCTGCGTCGTTCCGA
LOC_Os09g25970
OsAffx.30029.1.S1_at--810--4011Chr09:15597124..15597615 (25 bp)
CGTCGTTCCGACAAGATGGCTCAAT
LOC_Os09g25970
OsAffx.30029.1.S1_at--727--851Chr09:15597606..15597630 (25 bp)
ATGGCTCAATTAGGTTCAGTTTCAG
LOC_Os09g25970
OsAffx.30029.1.S1_at--16--6351Chr09:15597630..15597654 (25 bp)
GATGCTCATCTGATGGTTCAGCTTA
LOC_Os09g25970
OsAffx.30029.1.S1_at--23--6751Chr09:15597645..15597669 (25 bp)
GTTCAGCTTAGAGGCGACTTGTCAC
LOC_Os09g25970
OsAffx.30029.1.S1_at--801--891Chr09:15597656..15597680 (25 bp)
AGGCGACTTGTCACCTGCTTTGAGA
LOC_Os09g25970
OsAffx.30029.1.S1_at--739--8731Chr09:15597664..15597688 (25 bp)
TGTCACCTGCTTTGAGATCTTTTCC
LOC_Os09g25970
Target Sequence 
GGCCGAGAGGCCTTCCCGGCGTATCCGTGCTCCTCCTCCCCGACAAGGCAATGGACGCCGGAGAGGATATGCCTCCAGTT
GCCGAGGAGCCCACGCTGCGTCGTTCCGACAAGATGGCTCAATTAGGTTCAGTTTCAGATGCTCATCTGATGGTTCAGCT
TAGAGGCGACTTGTCACCTGCTTTGAGATCTTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis