Browse Element(s) Details


OsAffx.30030.1.S1_x_at

Description tigr:9637.m02259
TID=OsAffx.30030.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Avr9Cf-9 rapidly elicited protein 141
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2596011/11Receptor family ligand binding region containing protein
LOC_Os09g2599011/11Receptor family ligand binding region containing protein, expressed
LOC_Os09g260002/11Receptor family ligand binding region containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25920OsAffx.30027.1.S1_at11/119+15563062..15568469Receptor family ligand binding region containing protein, expressed
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein
LOC_Os09g25940OsAffx.17900.1.S1_at11/119+15575817..15579333Receptor family ligand binding region containing protein
LOC_Os09g25950Os.53948.1.S1_at11/119+15582193..15585474expressed protein
LOC_Os09g25960OsAffx.30030.1.S1_x_at11/119+15587269..15593377Receptor family ligand binding region containing protein
LOC_Os09g25970OsAffx.30029.1.S1_at11/119+15596968..15597719hypothetical protein
LOC_Os09g25980OsAffx.6401.1.S1_at9/119+15598148..15605591Receptor family ligand binding region containing protein, expressed
LOC_Os09g25990OsAffx.30030.1.S1_x_at11/119+15609714..15615400Receptor family ligand binding region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30030.1.S1_x_at--816--3552Chr09:15610134..15610158 (25 bp)
CATAACAGAGGGAGATTCTATAATT
LOC_Os09g25990
OsAffx.30030.1.S1_x_at--910--5013Chr07:9011449..9011473 (25 bp)
GCAGTCTAAACTTCAACAGCTTTTC
NONE
OsAffx.30030.1.S1_x_at--56--2513Chr07:9011457..9011480 (24 bp)
AACTTCAACAGCTTTTCAGGACTTT
NONE
OsAffx.30030.1.S1_x_at--1058--9612Chr09:15610019..15610043 (25 bp)
TCAGGACTTTTTCTAGTCACAGGAG
LOC_Os09g25990
OsAffx.30030.1.S1_x_at--836--5693Chr09:15619677..15619701 (25 bp)
GACTTTTTCTAGTCACAGGAGTTGC
LOC_Os09g26000
OsAffx.30030.1.S1_x_at--103--2632Chr09:15609987..15610011 (25 bp)
AACCTCAGCCCTTTTAATAGCCCTG
LOC_Os09g25990
OsAffx.30030.1.S1_x_at--1056--9492Chr09:15609954..15609978 (25 bp)
TCTCTACAAGAATAAGCACAGGATA
LOC_Os09g25990
OsAffx.30030.1.S1_x_at--439--3733Chr09:15609951..15609975 (25 bp)
CTACAAGAATAAGCACAGGATAAGG
LOC_Os09g25990
OsAffx.30030.1.S1_x_at--1095--4272Chr09:15609828..15609852 (25 bp)
CCTGCAACTGACAGTGCCAGATGAT
LOC_Os09g25990
OsAffx.30030.1.S1_x_at--1111--9012Chr09:15609826..15609850 (25 bp)
TGCAACTGACAGTGCCAGATGATTC
LOC_Os09g25990
OsAffx.30030.1.S1_x_at--802--5152Chr09:15609825..15609849 (25 bp)
GCAACTGACAGTGCCAGATGATTCA
LOC_Os09g25990
Target Sequence 
CATAACAGAGGGAGATTCTATAATTNATATAGAAAAGAAATGGATTGNGGACCANCATGCCTGTCAGAATGATGGCACNA
TNATCNGCTCNAGCAGTCTAAACTTCAACAGCTTTTCAGGACTTTTTCTAGTCACAGGAGTTGCNTCAACCTCAGCCCTT
TTAATAGCCCTGNTGATGNNTCTCTACAAGAATAAGCACAGGATAAGGNACAGCATACGTCGTGNNCAGACTCAGAAAGN
ATATGAANNAGAGNNAATAAATGAACAAAATCAAGAAANGACAATANACTCCAACCAGGTNCANAACCTGCAACTGACAG
TGCCAGATGATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30030.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis