Browse Element(s) Details


OsAffx.30027.1.S1_at

Description tigr:9637.m02251
TID=OsAffx.30027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glutamate receptor protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2592011/11Receptor family ligand binding region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25900Os.18770.1.S1_at6/119+15545365..15548202glycosyl transferase family 2 protein, putative, expressed
LOC_Os09g25910OsAffx.30026.1.S1_at11/119+15558430..15559764Basic 7S globulin precursor, putative
LOC_Os09g25920OsAffx.30027.1.S1_at11/119+15563062..15568469Receptor family ligand binding region containing protein, expressed
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein
LOC_Os09g25940OsAffx.17900.1.S1_at11/119+15575817..15579333Receptor family ligand binding region containing protein
LOC_Os09g25950Os.53948.1.S1_at11/119+15582193..15585474expressed protein
LOC_Os09g25960OsAffx.30030.1.S1_x_at11/119+15587269..15593377Receptor family ligand binding region containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30027.1.S1_at--1090--2412Chr09:15564007..15564031 (25 bp)
AAAATCACTTCCACAGGCATTTCCA
LOC_Os09g25920
OsAffx.30027.1.S1_at--324--2891Chr09:15563982..15564006 (25 bp)
AAGGGATCCCCTCTAGTTGGAGACA
LOC_Os09g25920
OsAffx.30027.1.S1_at--1143--6611Chr09:15563967..15563991 (25 bp)
GTTGGAGACATCTCACAGGCAATCC
LOC_Os09g25920
OsAffx.30027.1.S1_at--594--5291Chr09:15563868..15563892 (25 bp)
GAAGGCTCCATCATTGGTTCAGGGA
LOC_Os09g25920
OsAffx.30027.1.S1_at--513--1151Chr09:15563844..15563868 (25 bp)
AGTCTCACCTTTGCCAGTTTTGAAG
LOC_Os09g25920
OsAffx.30027.1.S1_at--285--8091Chr09:15563820..15563844 (25 bp)
GGACCAATCATCCTTACCGGAGTTG
LOC_Os09g25920
OsAffx.30027.1.S1_at--43--8051Chr09:15563802..15563826 (25 bp)
GGAGTTGTCTCGACTTCTTCTCTCT
LOC_Os09g25920
OsAffx.30027.1.S1_at--561--9571Chr09:15563787..15563811 (25 bp)
TCTTCTCTCTTGGTCGCCTTAATAA
LOC_Os09g25920
OsAffx.30027.1.S1_at--635--1411Chr09:15563188..15563212 (25 bp)
AGAAATTTTCCTGTTATGTCCTGAC
LOC_Os09g25920
OsAffx.30027.1.S1_at--489--6491Chr09:15563142..15563166 (25 bp)
GATATGATCCTTGAACGGCGCGGCA
LOC_Os09g25920
OsAffx.30027.1.S1_at--729--551Chr09:15563118..15563142 (25 bp)
ATCCTCGGGATGAACCAAAGGCTGT
LOC_Os09g25920
Target Sequence 
AAAATCACTTCCACAGGCATTTCCAAAGGGATCCCCTCTAGTTGGAGACATCTCACAGGCAATCCTCAATATAACAGGGG
GAGACACTATAATTCAAATTGAACAGAAATGGGTGCGAGATAAGAACAGTTGCCAGAATGAAGGCTCCATCATTGGTTCA
GGGAGTCTCACCTTTGCCAGTTTTGAAGGACCAATCATCCTTACCGGAGTTGTCTCGACTTCTTCTCTCTTGGTCGCCTT
AATAATACTAGCCAAGCAATTGGGAGAAATTTTCCTGTTATGTCCTGACTTGACCAAAAAGAGGATCATGGATATGATCC
TTGAACGGCGCGGCATCCTCGGGATGAACCAAAGGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis