Browse Element(s) Details


Os.18770.1.S1_at

Description gb:BM420605
DB_XREF= gi:18387407
DB_XREF=U014G11
CLONE=U014G11
TID=Os.18770.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.18770 (NCBI UniGene Cluster)
UG_TITLE=CSLC2 mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g259006/11glycosyl transferase family 2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25880Os.50448.1.S1_at11/119+15520969..15522889expressed protein
LOC_Os09g25890OsAffx.30025.1.S1_at11/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25890OsAffx.30025.1.S1_x_at11/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25890OsAffx.27472.1.S1_x_at1/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25900Os.18770.1.S1_at6/119+15545365..15548202glycosyl transferase family 2 protein, putative, expressed
LOC_Os09g25910OsAffx.30026.1.S1_at11/119+15558430..15559764Basic 7S globulin precursor, putative
LOC_Os09g25920OsAffx.30027.1.S1_at11/119+15563062..15568469Receptor family ligand binding region containing protein, expressed
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18770.1.S1_at--373--2291Chr09:15545917..15545941 (25 bp)
AAAGGCGCCGCTTGGTGCAAAAAAG
LOC_Os09g25900
Os.18770.1.S1_at--407--3151Chr09:15545809..15545833 (25 bp)
AATTCACTTCTATTTCCTTCTCTTT
LOC_Os09g25900
Os.18770.1.S1_at--471--10171Chr09:15545777..15545801 (25 bp)
TATCATTCCTTTTTGTTGGCCTCGA
LOC_Os09g25900
Os.18770.1.S1_at--564--10871NONE
TTGGCCTCGATCTAATTGGTGAACA
NONE
Os.18770.1.S1_at--616--6451NONE
GATCACTCTCAGTCTTTTTGTCAAA
NONE
Os.18770.1.S1_at--189--1431Chr09:15545432..15545725 (25 bp)
AGAAAGCATGCCTCTCTTCATACAC
LOC_Os09g25900
Os.18770.1.S1_at--1025--6011NONE
GAGAGTTCCGAACATGCCATGGAAT
NONE
Os.18770.1.S1_at--611--6771Chr09:15545613..15545637 (25 bp)
GTTACTTGTCCGTACAGATATGCAA
LOC_Os09g25900
Os.18770.1.S1_at--355--1051NONE
AGGTGAATTTGTTCTGCAATCCAGA
NONE
Os.18770.1.S1_at--320--3151Chr09:15545509..15545533 (25 bp)
AATTCGTTCATTTGTACCCAGTCCA
LOC_Os09g25900
Os.18770.1.S1_at--956--4331NONE
CCAGTCCACATAGAGTTCCAGCAAT
NONE
Target Sequence 
AAAGGCGCCGCTTGGTGCAAAAAAGGCTAACNAANTCTACAAGAAGGAGCTTGCTCTCTCTCTTCTCCTCCTCACCGCCG
CAACTCGGAGCCTCTTGNTCAGCTCAAGGAATTCACTTCTATTTCCTTCTCTTTCAGGGGGTATCATTCCTTTTTGTTGG
CCTCGATCTAATTGGTGAACAGATAGACTGATCACTCTCAGTCTTTTTGTCAAAACATAGAAAGCATGCCTCTCTTCATA
CACACACTGGAAATCAAGTTCTGAGAGTTCCGAACATGCCATGGAATTTTACTTCATTTTGGACAAGTTACTTGTCCGTA
CAGATATGCAAAGGTGAATTTGTTCTGCAATCCAGATTCAGGGCACAAAACCGGNAGTGATCCAACAGGAATAAGCTGAA
AGAGTAGATAGAATTCGTTCATTTGTACCCAGTCCACATAGAGTTCCAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis