Browse Element(s) Details


OsAffx.30025.1.S1_x_at

Description tigr:9637.m02247
TID=OsAffx.30025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=trehalose-phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2589011/11trehalose-6-phosphate synthase, putative, expressed
LOC_Os05g478301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25870Os.14919.1.S1_at3/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25870OsAffx.29313.1.S1_at1/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25870Os.56216.1.S1_at1/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25880Os.50448.1.S1_at11/119+15520969..15522889expressed protein
LOC_Os09g25890OsAffx.30025.1.S1_at11/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25890OsAffx.30025.1.S1_x_at11/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25890OsAffx.27472.1.S1_x_at1/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25900Os.18770.1.S1_at6/119+15545365..15548202glycosyl transferase family 2 protein, putative, expressed
LOC_Os09g25910OsAffx.30026.1.S1_at11/119+15558430..15559764Basic 7S globulin precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30025.1.S1_x_at--800--1431Chr09:15534085..15534109 (25 bp)
AGAACGTGATGAGGCACTACGCGGA
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--765--1911Chr09:15534114..15534138 (25 bp)
ACGGACGGGTCGTACATCGAGGCGA
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--257--9051Chr09:15534193..15534217 (25 bp)
TGCAGGCCAAGGAGCTCCTCGACCA
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--686--5072Chr09:15534256..15534280 (25 bp)
GCAGCGGCTACAAGATCGTCGAGGT
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--548--1051Chr09:15534277..15534387 (25 bp)
AGGTGATCCCTCAGGGCGTGAGCAA
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--28--4691Chr09:15534398..15534422 (25 bp)
GCGGAGTGCATCGTGTCGGCCATGG
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--735--1791Chr09:15534471..15534495 (25 bp)
ACCGCTCCGACGAGGACATGTTCGG
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--1026--2571Chr09:15534524..15534548 (25 bp)
AAGAACGGCGGTGCTTCGTCTTCCA
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--651--5931Chr09:15534613..15534637 (25 bp)
GAGCATGGCGAGCTACTACCTCAAC
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--608--991Chr09:15534642..15534666 (25 bp)
AGGAGGAGGTCGTCGACATGCTCCA
LOC_Os09g25890
OsAffx.30025.1.S1_x_at--920--9351Chr09:15534654..15534678 (25 bp)
TCGACATGCTCCATGGCCTGGCCTT
LOC_Os09g25890
Target Sequence 
AGAACGTGATGAGGCACTACGCGGAGGCGACGGACGGGTCGTACATCGAGGCGAAGGAGACGGGGATGGTGTGGCGCTAC
GAGGACGCCGACCCGAGGCTGGCGCCATTGCAGGCCAAGGAGCTCCTCGACCACCTCGCCACCGTGCTCGCCAGCGAGCC
CGTCGCCGTGCGCAGCGGCTACAAGATCGTCGAGGTGATCCCTCAGGGCGTGAGCAAGGGCGTCGCGGCGGAGTGCATCG
TGTCGGCCATGGCGGCGCGCCGCGGTGGCGCGCTGGGGTTCGTCCTGTGCGTCGGGGACGACCGCTCCGACGAGGACATG
TTCGGGGCTCTCGCGAGCCTCTGCGGCGGCGGCAAGAACGGCGGTGCTTCGTCTTCCACCACCACCACCACCGCGCTCCT
TGCGGCGGCGCAGGTGTTTGCGTGCACGGTGGGGAACAAGCCGAGCATGGCGAGCTACTACCTCAACGACAAGGAGGAGG
TCGTCGACATGCTCCATGGCCTGGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30025.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis