Browse Element(s) Details


Os.50448.1.S1_at

Description gb:AK121239.1
DB_XREF= gi:37990862
TID=Os.50448.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023096E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096E02, full insert sequence.
FL= gb:AK121239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2588011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25850Os.26486.1.S1_at11/119+15492030..15496521Gl1 protein, putative, expressed
LOC_Os09g25860OsAffx.20969.1.S1_at1/119+15497414..15505057expressed protein
LOC_Os09g25870Os.14919.1.S1_at3/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25870OsAffx.29313.1.S1_at1/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25870Os.56216.1.S1_at1/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25880Os.50448.1.S1_at11/119+15520969..15522889expressed protein
LOC_Os09g25890OsAffx.30025.1.S1_at11/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25890OsAffx.30025.1.S1_x_at11/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25890OsAffx.27472.1.S1_x_at1/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25900Os.18770.1.S1_at6/119+15545365..15548202glycosyl transferase family 2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50448.1.S1_at--610--7331Chr09:15521496..15521520 (25 bp)
GTGCATGAACTACACGTTGCCGGAC
LOC_Os09g25880
Os.50448.1.S1_at--930--5511Chr09:15521424..15521448 (25 bp)
GAAACACCACCAGTCCGGGATTGGG
LOC_Os09g25880
Os.50448.1.S1_at--490--7111Chr09:15521346..15521370 (25 bp)
GTCATCCGGATGGTGCTTGGTTAAC
LOC_Os09g25880
Os.50448.1.S1_at--477--8431Chr09:15521164..15521188 (25 bp)
GGCCTCGATTTATGTCTCCAGCGAA
LOC_Os09g25880
Os.50448.1.S1_at--140--5411Chr09:15521142..15521166 (25 bp)
GAAGCTGCTACCATGATTCGTACGT
LOC_Os09g25880
Os.50448.1.S1_at--154--111Chr09:15521127..15521151 (25 bp)
ATTCGTACGTGTTTGCCTGTGTGCC
LOC_Os09g25880
Os.50448.1.S1_at--1046--10691Chr09:15521058..15521082 (25 bp)
TTGCCGTGTGGTCGATCTCCTACAT
LOC_Os09g25880
Os.50448.1.S1_at--960--9871Chr09:15521038..15521062 (25 bp)
TACATCCCTTGCCTGTAGCATTATT
LOC_Os09g25880
Os.50448.1.S1_at--131--6971Chr09:15521024..15521048 (25 bp)
GTAGCATTATTCACCTTATCTTCAA
LOC_Os09g25880
Os.50448.1.S1_at--493--5231Chr09:15520994..15521018 (25 bp)
GAATACGGTGGTACTGACAGCGCAG
LOC_Os09g25880
Os.50448.1.S1_at--232--5651Chr09:15520979..15521003 (25 bp)
GACAGCGCAGATGGTGTTGTTCTCT
LOC_Os09g25880
Target Sequence 
GTGCATGAACTACACGTTGCCGGACAACCTCCTCAGGCGTCGTTCGGCACGTGGGGAGGGATTTCCCTGGGGGAAACACC
ACCAGTCCGGGATTGGGTGGATCCCCTCCCACCACCCAATCCCCTTCCACGTTGGGTGTTAAACCCCCATGTCATCCGGA
TGGTGCTTGGTTAACAGGGGAAATAGCAGGGGAAAACTTTCTTTTCAACTCGCCACCACCGGCTGCTCGATCGGCTCCCT
GCCGCCACGGCGCCACCTGCTCTACCGCCGCCATGCACGTCCGCGTCTCCGGCGTCGCGCCATCCTTGTGTTTGCCTCTC
CGGCGTTCTACCGGCCTCGATTTATGTCTCCAGCGAAGCTGCTACCATGATTCGTACGTGTTTGCCTGTGTGCCGAGGCC
GCGATCTACACCGTCGTTCCCGTCTCGGCTGGTCTGTGTTGCCGTGTGGTCGATCTCCTACATCCCTTGCCTGTAGCATT
ATTCACCTTATCTTCAAGTTGTGAATACGGTGGTACTGACAGCGCAGATGGTGTTGTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis